Array 1 217-1038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBR010000021.1 Escherichia coli strain C5-3 c_000000000021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 278 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 339 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 400 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 461 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 522 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 583 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 644 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 705 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 766 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 827 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 888 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 949 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1010 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCCTGACTTTCCAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGAG # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48111-48994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINBR010000033.1 Escherichia coli strain C5-3 c_000000000033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48111 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 48172 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 48233 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 48294 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 48355 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 48416 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 48478 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 48539 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 48600 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 48661 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 48722 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 48783 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 48844 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 48905 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 48966 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //