Array 1 124906-123716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVCC010000004.1 Escherichia coli strain ROAR-059 / O17:H31 / fimH426 / 3774 (ST Warwick) isolate Faeces, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124905 29 100.0 32 ............................. GAAATACTACGCCCGCGTGTGTTTTCAACAGG 124844 29 100.0 32 ............................. CGCACAGGCGTATCGCTTTGTTATCTTTATTC 124783 29 100.0 33 ............................. TTGATCGCCCAGTCCCGGAGCGAGGAAATACCT 124721 29 100.0 32 ............................. CTGATCGGTCACCCGTTTTGGCGCGTTTATAT 124660 29 100.0 32 ............................. GGGTTCTATTTCGTCGGGATTTGCCGACACGC 124599 29 100.0 32 ............................. CCGGACGGCACTGGTCTGACTGAAATCTCGCT 124538 29 100.0 33 ............................. CAATTCAGCGGCAGCGCACCGCCCATGCCCTGC 124476 29 100.0 32 ............................. ATTTCGAAACCCCGGCAATATTCTTTAATGTG 124415 29 100.0 32 ............................. TCGGGTTTGTCGTCGGGCAGAATAGTGTGGGC 124354 29 100.0 32 ............................. GGCTTACACGCCACCATGGCATCAAGAACGAT 124293 29 100.0 32 ............................. ATTACGACTTCCGCACGCACCCACCGTTTGTA 124232 29 100.0 32 ............................. CGCACTTTCATTGTTACGCCGTCAACAGTAAA 124171 29 100.0 32 ............................. GTCACACATCGCGTCATGCCGTTCGCCAGGAA 124110 29 100.0 32 ............................. TGAATACGGACTGCGGGTAACAAGGCGTGTCA 124049 29 100.0 32 ............................. CGTACTGCTTACTCCGTCATCGATGTATGAGT 123988 29 100.0 32 ............................. TAAACCCCTCGCGCATCGAGTCAAATGTCGGA 123927 29 100.0 32 ............................. TACGTGTCGCCGTTACAGATTTCAGTCTGTTA 123866 29 100.0 32 ............................. GGCGTCCAGTGATGCTTTCTGGTGCTCGAATA 123805 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTTGAGGCGTGGGC 123744 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCGTGACTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 151598-150898 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVCC010000004.1 Escherichia coli strain ROAR-059 / O17:H31 / fimH426 / 3774 (ST Warwick) isolate Faeces, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151597 29 100.0 32 ............................. TTGTTATTGATAACAGTAGCGGTATGAGCCAG 151536 29 100.0 32 ............................. TTTTTATAATTGCTGTGGCAGCGGTCCTTCTT 151475 29 100.0 32 ............................. AATATCACGAAATGATGCCGATGATCATCCTT 151414 29 100.0 32 ............................. AAATAGACGACCAGATAGCCGACCAGGTTGGA 151353 29 100.0 32 ............................. CCAGCAGTTTGACGTGATGGCCGATCAGGCGG 151292 29 100.0 32 ............................. CCAAAATATTCAATCACCCCGCTGGGTAAACC 151231 29 100.0 32 ............................. CCTATGCCAGCGAGCTGGAGCCAGAAAAAACG 151170 29 100.0 32 ............................. GAACGGTGCTACTGCCAGACTGATACGCTCAG 151109 29 100.0 32 ............................. ATATTTCTGTTACAGGCGATAACGGCGGCACA 151048 29 100.0 32 ............................. ATTAGCCGCTTCACTAAACCGCGCGCCAGTGC 150987 29 100.0 32 ............................. GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC 150926 29 93.1 0 ................T...........A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGTCTCTGAAAAACCTCCATTTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGGTTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTGCTTAAGTATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //