Array 1 53524-53197 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000001.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 53523 29 100.0 32 ............................. ACCCAGGCCCTCGGTGAACGAGGCGACTCTTT 53462 29 96.6 32 .......................C..... TCCACTTCGCCCAAGCGGGCCAGCTGGTTCTC 53401 29 96.6 32 ........T.................... GGCGCCGCTGAGAATCTGGTCGAGCAGATGTT 53340 29 86.2 36 ...T.....................GAG. TTCGTCCACGTGACGAGACGCTGCGTGTCCGCATGC 53275 29 75.9 22 ....A..GGA........A......G..A GCCGTCGCGGCGTCTTCTGTGC Deletion [53225] 53224 28 75.9 0 .G..CG.T....T........-....T.. | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 88.5 31 GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : GTCCGCCCGCCGAAACCTTCTCGTCCCGCCCGGGCGCCCATCCGGATCCGCACCCCCGACACCCGCGATGACCTCGGTCACGGCAGCCCCACCTGTCTGCGCAGCAACGTCGGAAACGCCCTCACCGCCCCCCTGTGCCTCACCTGACCCCCGAGTCATACTCGGATGCGAGCGCCCAGACCGCCCTCTAGACTCTGATCGGACAGGAGCACCACCCACCGAAGGTCGGTGAGGCCGCACCACCACACACGAGGGTCGCTAGCTCAATTGGCAGAGCTCCGGACTTTTAATCCGTAGGTTGTGGGTTCGAGTCCCACGCGACCCACCACTCTTTCCCAGGGGCAACTACAAGCTGGCCCCGCCCTGCCTCCCAGCTGGCCTCGTCCCAGCCGACTTCCGCGTGAACAGGGAGCACGGCACCGCACATTCGTTCTGATGCGGACCAACCCCGCTCGCGCGGGGAGAACCCTGATGACGGTCACGTGCACTGCTGGTCTTCC # Right flank : CAGCATTCAACGTAGCTCGCCGGTGAGCATGCCCGTTCATCCTGTGCAGGCGGGAGAGCAGGTGCGAGCGGAGCGGCGGTTGTCGTTCTGGTGCGCTGGCTCAACTCGTCAGGCGGGTTTGACGGCGGGCGCGGGTTGAGTGTTGGACGCGGACATGGCGGTCTGTCCGCGAGACGGGCGAGGGCTGCTCTTCCGGCGTCGGATACCTGTCAGAAGGTGTTTGTGCCTGTTCGGAAGTGGGCGTCGAACAGCCTGACAACACCGATCCTCTTGTGGACACGTGGGTGATTCGTGACCGTGGACTCCGCCGCGTGCTTCGACCCCCCGCTTCCGCACAGGAGAGACGATGAAGCTGCCCGCGTACGCTGCTGCCCTCGTGTCGGCCGCACTGGTCACGGCCCTCGCCGGAACGTCCACGACGTCGGCGGCGCCCGTGGCCGACGTCCGGGCCCTCCCGAACGTGAACATGGAGGCCACGGTCAAGGCCGCCCAGATCGACC # Questionable array : NO Score: 3.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:-0.14, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-515 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000166.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2 28 100.0 33 ............................ CCCCGCCCGCGACCGCCTGTACGTCAGCATCGC 63 28 100.0 33 ............................ CGGTCCGGAGAGTACCCCTAGATGGAACCCGGC 124 28 100.0 33 ............................ GCCGACGGGGTCGCTGTGGGTCAACCTCGGCGA 185 28 100.0 33 ............................ TACCGGGTCGTCGACGACAGCCCGGACCCGGCA 246 28 100.0 33 ............................ CCTTCCGGCGCTTACCGTCCTTCTGGTTCTCGG 307 28 100.0 33 ............................ GCGGCGTATCGAGGACGCGGTGGGGTGGGCGCG 368 28 96.4 29 ...........................T GTGAGGCAGCACTGACCCGCAGGCCGACC 425 28 96.4 33 .A.......................... CCGGGGCTCCTGGTCCGGCGAGATCTTCGGCCA A,A [428,430] 488 28 85.7 0 ........T..G..G............G | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCGGCCCCGCACACGCGGGGATGGTCC # Left flank : GG # Right flank : GCACGTTCGGCAGTTGCCAGAGGGCCTGCCGAGTCGGCTACCGCGCTTGGAGCGGGTGGTCAGCCCCTGACCAGGACGGCCAGGAGCTCTACGTGGTGGGTCATGGGGAAGGCGTCGAAGGCGCGGAGGGTTTCGAGGGTCCAGCCGCGGTCGCCGAAGTAGGACAGGTCGCGGGCCAGGGTCGCCGGGTCGCACGAGACGTAGGCGATCCGGCGGCCGGCCAGGCGGGCGACGTGGTTCACCACCTCGCGGCCGGCCCCGGCGCGCGGCGGGTCCAGGACGATCACGTCGGCGCCCCGCACGCGGGAGCCGCCGCGGTGGTCGGCGCGCTTGGGCTGGGCGCGGTCCGAGAGGTTTTCGGCGCGGCCGAACTCCAGCTCGGCGATCACCTCGTCGACTCGGCCGCGTTCGACCGCGACCTGGGGCATGTCGCGCAGGTTGAACTTGGCGTCGCGGACGGCCTGGGGGTCCGATTCGACGGCCACCACCAGCCCGTCCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82454-82947 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000021.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 82454 27 81.5 37 C.C..........CA.....A...... AACTCCTGATCGACCTCGATCCGCAGGGGCACCTGAC 82518 27 88.9 42 .............CA.A.......... CACAGCGTAAGGCGCTGGCTAAGACCGGTCGCGGCCCCAAGC 82588 27 92.6 40 ..............A....C....... GACATCACCAGAGCATTGTCGTGTCGGCGCTGCGTGTCGC 82655 26 88.9 40 ....AA............-........ GACGTCTCTCTCAGTGACGTGTCCTCGATGCCGAGGGCAG 82721 27 100.0 37 ........................... CACCCCTGCCGAAGCTGATCATCCACAACGCCCCGTT 82785 26 85.2 40 T.............A...-....A... GACCTGTCCTCGGTCGACCTGGCTGTGCTGACGGTGCAGC 82851 27 92.6 42 .G............A............ GACCCGGCCCGCGCACGAACGTGCCCTTCGCGGGGAGCGTGA 82920 27 77.8 0 ..............A...C..T.TT.T | C [82939] ========== ====== ====== ====== =========================== ========================================== ================== 8 27 88.4 40 GTTGCGATCCCTCTGGGGGTGATGAGC # Left flank : ACCTGCGGAAGATCGGTCGTCGCGCGACAGGCGTCGGCGATCTGCCGTACCTGCTCCGGGGTGAGGCGCACCTGGGCGGCCACGGTGGCGTGCGCCTGGACGTCCCCGCCGACGGCAAGCCCGCTCGGCTGCATCGGCAACGGTGTGGTCGCGAGCCGTGCGCGGCGCTCCCCGCCGCATGCCCCGACCAGCGAGACGACCAGCATCACAACCACGGCGGCGCCCAGCGCCCCCAGCTGTCGGCGACCCAATGGCTCCCCCACTGCCACAGACGCACCGGTAGACGACGGGAAGATGTCCGCTCCTCCTGAGCAGAAACCTCCCCGCCAGCATCACGGCCCATCAGCACCACAACAAGCAGCCGGACAGGGGCCAGGGACCATCTCCTGCGAACACAACGGCCTCATCGAAGCCCACCGAACACCCCCAGGTGCTCGATGGTGGCCGTGATCAGCGACCGGACGGCCTCCAGCCGTCCTGGACCGCGCCGCGGTGGACGG # Right flank : GGATCGTGGTTGAGCCAGAGCATGAGGCTCGT # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCTGGGGGTGATGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 22776-24458 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000032.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 22776 29 96.6 32 ............................A CAACGACACCGGCTTTTATGCGCAGGGTCCTC 22837 29 93.1 32 ..........................T.G ATCATCGGGTCGGGCGTGACCGAGGATGAGGT 22898 29 100.0 42 ............................. TCGCCGAAATGCAGGCGACCGCCCATGCGCTGGGGAGCAAGT 22969 29 100.0 32 ............................. TGGTGGGACCCGACCTCCGGCATCGTTGTCAC 23030 29 96.6 32 ............................G CGGGCTGTGTGCATCAACGTCACTGAGCCTGC 23091 29 100.0 32 ............................. CGGCATCACCGGTTCGGCCTAGCGTCTGCCGC 23152 29 96.6 32 ............................G AGGGCGAGATACCCGAGGACCCGCTGCTCGGG 23213 29 100.0 32 ............................. CGTTCTGCGTACGGTTCTCGGTGCCGCGTTCC 23274 29 100.0 32 ............................. TTCGTCATGTCGATCGCGTCCCCGATGTCCGG 23335 29 96.6 32 ............................G CTCCCTGACTACCGGGCCCTATCCGCTGAGTA 23396 29 96.6 32 ............................T CGATCACTGTCGGGCGTCTCGGGATCGTGCCG 23457 29 100.0 32 ............................. TTGCGCCATCATCTGTCCCATGGCTACTGCCG 23518 29 100.0 32 ............................. GCCGCAGAGCCCTCATCGTCGGCGCCAGCGGT 23579 29 100.0 32 ............................. GACTCCTCTGTGTCCTCTCGGAAATGGGGATC 23640 29 96.6 32 ............................T CTCGTTGCGGAGAGTAGCGCGAATTTCAAATT 23701 29 96.6 32 ............................G CTGCTGATCTACTGCCGGGCGGGGTGCGAGCG 23762 29 96.6 31 ............................A CAGCGAAAGCGCCCCGCCCACCGATGTCACG 23822 29 96.6 32 ............................G AGCATCGGCGGCGCCTGGAACATCCTGGGCGA 23883 29 96.6 32 .....T....................... GCCTGCGCGGCCTCGCGGGTGGACGTCTCCAC 23944 29 100.0 32 ............................. AGCATCGAGAGCACTGTCAGGGCGATGACTGC 24005 29 100.0 32 ............................. TGACGAGCGGAGCCGAGGCGCTCCGGCGACAT 24066 29 96.6 32 ............................T CCTGCCGGGCCTTGCCGGGCGCCGGTAAAGCT 24127 29 100.0 32 ............................. ACCTCGGCGGGCCGGCCGCCGCTCGGTGACAC 24188 29 89.7 32 ................T.......G...T GACCGCCCACGCCGCCGTGAACGCGGTCTTGA 24249 29 93.1 32 ........................G...G CGGCGTCGCTTCGCGATGGCCCTTCGGGCCAC 24310 29 86.2 32 .............C..........G.T.G CTGCCACCGAGTCAACGTACGGCGCTTACGGT 24371 28 86.2 32 ..........T......-......A..A. CGGGCGTAGACCGCCGCGACGAACCGGTCTTG 24431 28 72.4 0 ....A.TT......T....A.-.T....T | ========== ====== ====== ====== ============================= ========================================== ================== 28 29 95.8 32 GTCGGCCCCGCGCACGCGGGGATGCTCCC # Left flank : CTCCACCTGCGCGCCCGGTCGCGGGGTGCGTAGGGACAGCGCACAGCGACTGAGCCCGTCGGCGACTTGCCTGCGAGAGCGCCGGGGCCGAGAAACCGCCTAGCAGGCTGCGCCCGGAGAAGCCCTGGCTCATCACCGAAGGACGCGGGTTCGATTCCCGCCACCTCCACAACTCCACAAGCCGCTGGCCAGACACGCTCTGGCCAGCGGCTTTTTGCTATCCACCCACCTCCCGCCGGCCGAGCACCTCATCCGTTCGGGCAGACACGACAGCGTCGGTCCGCGATCGCGCCTGTGGTGACGGCGGTGTGCGCCGACCGGCCCGTGGACGGTAGCCACGGTTCGCCGCGGTGCAACTGCTGGCCAGGCTGGTGCGCCACCTGCGTGTGTCGTGCAGCCTAAGGTCGCCGACGGGTGAAAGGCCGACCGGCCGCCAGAGTCTACGAATCCAACTGAATGAAATCCCGACTCCGCCGTCATAGACTCGCAGGTCAGCAAGT # Right flank : TTGCATGTGGCGAATGTGTGGAGGCGAACTTGTGGCGGGGGAGAGTGCCCCCCGTCGGTGTGGGGGACGGCCGGGGTGTGTGATTGCGGTTAGGAGCGGGCGGTCGCCGGGGTGGGGTGGGGTTCTGTGGCTGTGTCGTCGGAGCGGATCACCGTGAGGGAGATCGCTGCCGCGCCGAGGGCGCCGATGATGGCGAACGCGTAGAAGCCCCAGGGGTAGGCGAGACCTGCCGACAGCAGGGAGCCGCCGAGCAGCGGGCCGCAGATCGCGCCGATGCGTCCGACGCCGGCCACGGCGCCCAGGCCGGTCGCGCGGCTCGCCACCGGGTAGGCGCGGCCGACGGCGGCGTAGACCAGCACCTGCGCGCTGAACACGAAGCAGCCCGCCAGGAAGACCGCCGCGTACAGGCCGACGCTCGGCAGCTTGACGCTGAGCAGCGCCAGGAACACCGCCGCGGCGCCGAACCAGGCGATCGTGGCCGGCCGGACGCCCCTGCGGTC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 103029-103424 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000004.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103029 29 96.6 33 ............................T TGCAGTGACGTGCGTCACGGCGTCGGGCGGCCC 103091 29 96.6 32 ............................C ATCTCGTTCAGGTGATGCACGCGCAGCTTGTC 103152 29 100.0 32 ............................. CAGTTGCAGCCAGCGAGATCGCCGTGATCAGC 103213 29 96.6 32 ........T.................... GTCTTCGACGACCGCGCCGCGGAGGACTGGCC 103274 29 79.3 32 ........T.TC.......C....CT... ATGTAGCTCCTCGCAGGGTCGCGCATGATCGC 103335 29 89.7 31 ...A.....A..................C GCAGCTCGGCCACCCAGAACGCGGTGCACAC T [103360] 103396 29 79.3 0 .....................G..TGGGA | ========== ====== ====== ====== ============================= ================================= ================== 7 29 91.2 32 GTCGGCCCCGCGCACGCGGGGATGGCCCG # Left flank : AGTAGGCGTCGCTGTGAGGCCGCCGCTGCTCGGCGGTGGTCTGCGGGGCGTGCAGGCGTCCCAGGTAAGTGAACTCCTGAACCGGCCACTCCTCGTAGGCGACGTCGGGGAACCGTTCGACGGTCGCCCGGGCCGTCTGCCGTGCGCGGACGAACGGCGAGCTGACGATGAGGGCGGGCGACTCGGGGAGCTGCGCGGCCACCCGTTCGGCCTGTCGCCGTCCGAGCGCGGTGAGCGGGGCCGCCGCCGGGCCGTTCGTGGGAAGCCCCGCGTTCGACTCGCTCTCCCCGTGCCTGACCAACCACACCCGTCGTGTCGCCATGCCGCCAGGGTGACACAAGGCCGCGGTGGTCGAACGCCGGACGCTCGGCGAAGCCGCCCCATTTCCGAATTGACCACAGTCACCCCTCCGGAAAGCCACTTCGATCGGCTATCAGAACCCGCGAATGCAACTGAATGAATTCTTGGCTTTGCCGCCGTAAGCTCGCAGGTCAACAAGT # Right flank : AACGCGGCTGAGGGTGTGTCTAGGACGCGTTCCAGTCGGTGCTGCGGCCCAGGTAGGTCAGGGGGCCGGGGTCGGGGACTGGGATCTCGTGGAATCCCAGCCGGTCGTAGAAGGCGCGGGCCGGGGTATTGGCGGTGACCATGGCGAGGTGGACGTTCGCCACGCCCTTGCGGCGCAGCGCGTCGAGGAACGTGCGCATCAGGGCGCGGCCGTGGCCCTGCCGCTGGTAGGCGGGCAGCAGGTCGATGTGCAGGTGGGCCGGATAGTCCTCCACTTCGGGCACCAGCATGCGCTCGGGATGGTGCATCAGGTCGATCATCTCTTCGCTGGGCGTCGACGGAGGACCGTCGGGGAGCGGGAAGCGGTCCACGAGGGTCGGCAGCCACGACGCGCGGAACGCCTCGACGAACGCGGCGGTGTCGGCCGTGCCGAGGATGTAGCCGACGGCGCGTTCGCCGTTGTCGAGGACGAAGGCCAGGTCCGGTTCGAGGTGGAGGTAC # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24628-25853 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000029.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================================================================================== ================== 24628 29 96.6 32 ............................G TGTGGTCTGCCTTTTGGCCACAGGTCGAGCGT 24689 29 96.6 32 ............................T TCCTGCGCAGCTCGGTCATGGACAGGTCCGGG 24750 29 100.0 32 ............................. ACGCCCGGCCATGTCGGACAGCTCATCGGCCG 24811 29 100.0 32 ............................. GAGCCGGACATCTGCTCGTCTACATCCCCGTC 24872 29 96.6 32 ............................G TACTACTACGGCGGCGGCCTGGCCGTGGGCCC 24933 29 100.0 32 ............................. ATCGCCGGGCAGCTGGGCGGCAGCAGGCGCCG 24994 29 100.0 32 ............................. ATCGCCGGGCAGCTGGGCGGCAGCAGGCGCAG 25055 29 100.0 32 ............................. CCGAGGCCGCGTCAAGAGTCGCCGGGGCAGTG 25116 29 96.6 32 ............................G TCCAGATGGACTTTAGCGTCACCGTCAGTGTC 25177 29 100.0 32 ............................. ATGGCCGGACATGACGGCGGCAGCAGGCGCCG 25238 29 100.0 32 ............................. ATCGCCTACGAGACGCTCCGGGCCATGCGTGC 25299 28 96.6 33 ..............-.............. AGTCGGACCTTGCGGACCGTCTGGAGAGCCTGG 25360 29 86.2 32 .G.........A..T.T............ CTCGTCAGGTGGCGGATGGAGTACACGTGCGG 25421 29 89.7 32 ............T.T.....C........ GTCACCGCGTATAGCTGACCCCACCGGAACAT 25482 27 79.3 195 ......T.............--..A.T.G GAACGATGTTCCCGCCGATCCGGCGTCGAGTTGGCCCGCACAAGTCGAGGTGGCCACGGCTGCGAGGGGCTTCGACCCAACAATGAGTTGGCCGCGCGGACATTTGGGACTGGGATCCCACGCCTGGCGGTCGCTGGCGGCTGTGTCGGCCCAGCGTGGGAAGGTCCGGACGAGTAGACCATGGGCCCGCTGCAT 25705 28 82.8 91 .G.....T....T....-..........A CGAACTCCGGACGCAGTTCGCTGTGGTGCTGCCGCATGGTGTGTGCGAGGTTGGTCCGCAGGCAACCCAGAAGGTCGAGGCGCGGTTGTCT T [25730] 25825 29 72.4 0 .G....G.T...TTT.........C...G | ========== ====== ====== ====== ============================= =================================================================================================================================================================================================== ================== 17 29 93.7 46 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGGGTTAGGGAAGCGCGCTGATCAGGAGTGTACGGTGCGTAGGCGGTCCTGTGCGAACGATCTGTGCACTCGCCTCGTCTGCGAGCGAACTGCAGGCGACTTCCCGCGCCCTCGCTCTCCAACGTCCGCCAGAAGGCGAGACGTGCCCCAGGGATCGGATCGTCCTGCCGGAGTGCGGTCTGAGGACGCCCACGCCGGCGTGACCACCGCGTAGATGTTCCGCAGGACCTGCCTGCCGCTTTCCGCAGCTCGTCGACCGTCAGACATGCTTCGCGCATCCGCTCCATGTTGTGCACGGAGCACCTACGGCCGATGTGCCTTGCAACTGAGCACACGAACCACGGCTTGACTGACGCCTCCTTCCTTGCCGTTCGGCATCCGTCATGGATTGCATGAGCGGGGGCGTTCCAGCTTCCGCAGCCAGATGTTCAGGTCAGTACCTGCGAACCGAACTGAATGAAAACTGGCCGTTTCCTTCATAGACTCGCAGGTCAGCAAGT # Right flank : GCTCGGGCGTGCGTCTGGCCGTGTGGGGCAAGGCTTCGACAGGAGGGCCTGGGGTACCGCTGGACAGCATTGCGGACTCCAAAGGGAACGCTTGTCTTCCAGCCCAGGTATGTCTTCTGCGCATGGCTGACCGGCCCACCGGGCACCCTCGATGCCGTGACCGCCCCACACGCACCGGCAGCGTTGGCCGCGCTTCTCGTCGCCGCATACGTCGATCGCGACGGCAGGCAGGCGGATGCGCTCATCAACGGGTTGACCGACCGCCAGCGGCAGCAGCTGCTGGACGCCCTCGGCGCGCTGGCCCGGTCCACCCGCACCGCGGTGTCCGGTGCAGACGGTCACGTCCCCGGAGTCGGTGACGCCCGGTCGCTCGATGAGCGAGTGCACGAGGTCCTCGCGCAGGTCACCGACGTGGACACCGAGGCCGCGCTGCAAAGCTACCTGCACCGGCCGCGCACCATGCCCGGAGAGACGCCTGCGGCGTCGGCCGCCGAGGTCAC # Questionable array : NO Score: 4.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-1.26, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53125-52548 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000029.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53124 29 96.6 32 ............................G ACTCCTCATCATCTCCGCGCGCGCGTGCGCGC 53063 29 96.6 32 ............................T CATCTCGGGCAGCATGTCACGCAGCAGAGTTG 53002 29 100.0 31 ............................. CCCTAGATGTGACGCCAGGTGGTCCCACGGG 52942 29 96.6 32 ............................A TCCGGATCCGCCGCGAAGGTTGTCGTTGACGC 52881 29 96.6 32 ............................T CAGGTCGTTGGGCAGGTGGCCGGTGACCGCCA 52820 29 96.6 32 ............................G CTCGCACCGACCACGGTCGAGACGGTGTTCGC 52759 29 100.0 32 ............................. GTCCGGACAACACCAGTCGTGCCGGTGAGCAC 52698 29 100.0 32 ............................. GGCACATCCAGCCCCTGCACGAACACGCCTTG 52637 29 96.6 32 ............................A GCCCAACAGGAAGGAAGCCACGGCGATCCCCG 52576 29 93.1 0 .......................A....T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : TTTGGGCGACCTGGCGCCGGTCGGCGCTGGTCGCAAGACGCATCCGCACTCGCCCATCCTGCGGCACCGAAGACTCGCCTGCCGATCCTTCACGCCGAAACGGCCGTCACGCACCTCAACTTGCCAAACCATCCCCGCGTGCGCGGGGCCGACGAGTGAAGCGGAGTTCGGGATCTCCCGTGATGGGACAGGATGTCGTTGCCTGCCGGACAGGAGCCATGGCAGGCGGCGCATAGGTGCAGCGGCCAGCTGATGACGCACACACTGTGGCCGTAGTGCTCGGGCCGGAAAGGCGACAGGACAGCTGGACTGGAGTGGCGAGGGGCCACAACTTAGCCTCCAAACGGCGCGGGGGCCACGACTTCGGGTCCCGCTGTTGGCGTCACTCGTCGCTTCACGACCGTCTCGTTCAGTGGATCGCCCGTCGGCCCAGCGGGGAGCCGTCGGTGCAAGCTAATGAAAACCTGGCTTCGCCGTCATAGACTCGCAGGTCAGCAAGT # Right flank : CATCATGGGTCGCACACCTACGACGCAGCGGTTGGCGCATCTGGCATTGAAGGAGCACCGAAGGAGCTATGGGACCGCCGGGCACGCACGATGTAAATGATCACGCAGGTACAACGCACGAACAGCAGAAGACCCGCCCCTCACGGCCGAGGAGCGGGTCTCTGACCTGCGTGGGCGATACTGGGTTCGAACCAGTGACCTCTTCGGTGTGAACGAAGCGCTCTCCCACTGAGCTAATCGCCCCTGCCGGTCCGCCTTGCGGCGTTCCCGACGACCAGAAGAGTAGCGCATGTTGGGGGTTGTTCGCGCATCGGAGGGGAGATCCGCCGGAACGGCGGGCGGCGCCGGCCGTCGGCATGCCTCGTCGCAGTCTTCCTCGGCGGCGTGATCTGGCAGGTCATGGGCGCGTTCGGCGACGGTGGCCGGGGACCGGAAGCGAGAGGGTGTGCTGGCTCACGCTATCCCGGGCGTGCGGGGACGGCGGAAGGAAGCGGCCTGAG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30887-31050 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000048.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 30887 30 100.0 39 .............................. TTCGTGCTGGCCAACGGTGGCCGGGTCAACATGTCCACG 30956 30 100.0 35 .............................. CGCAGCTGGCGGATGAGGGCCAGGACCTCACGGCC 31021 30 83.3 0 .................T.......A.CTG | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 94.4 38 GGTCGCTCATCACCCTGGAGGGATCGCAAC # Left flank : ACCTCTTCGGCGCTGGCCCACCGGAAGTCTTTGCTCTCGTCTGAGGGGGTAAGGGTGCCGCCTTCGACCGTGCAGCGGAAGACCAACGCCACGATGCCGCGTGCCATGTTCTTGTAGATGCCAGTCAGCGCTGTGGGAGTCACATGCAGGCCTGTCTCCTCGAGAACCTCCCTCTTTAGGCCGCTGATGATGTCTTCGTCGCGTTCCAGCACGCCGCCCGGTGCCTCCCAGTGGCCGTTGTCGCGTCGTTGGATGAGCAGGGCCCGGCGGCGGTCGTCAACGACTACGCCGGCGACGCTGACTGAGTGGCGGCTGTCTGGCATTGCTCCCCTTGCTGATCGTGCTCGCAGAGAAAAGCTACAAGCGCTCGCCTGGTCCTACGTGGATCGTCGCGCTGTGTGTGCCTCGCTGACCTGCGCAGTTGCACAACCGCCGGGTCGCTGCAAAATCGACAGAGAGAGCAGCTCGTTCTGGTGGCGTGACCTGGGACTTTACCCTCG # Right flank : GCCCGACAGCGCGCCAGGCGCGTCCGGAGGTATCGCCCCCCTGGAGCTAGCAAGCCTCCGGGGGCATCACCCTCGCGCCCAGTTCCTGACCGCCGCCACAAGCGGGGCGCTCGCGTTGCTTCGGCTGCTCTGTGCCGAACAACGTGCTGAAGGAGGTTGCCGCTCTCCAGGGCAGTGCACGTCTCTGCACTGCCTCACTCTGAGTAGTTACGGCCTTGCCAGCCTCCATCGCAGTGGCAGGCGGCGGCATGACCTACGGCACACGGGGTTGACCTGGCCGACGGCGGCATTCCTGTACACGTCCTACAGAAGACACGGGCGACTGACAGTCGCGCAGGGGCATCTGCACCAAAATCATCGGTCGATCACAGAGGTGGGGGAGGTGCTGAGTCTGCATCTGCGCAGGCCCCCGTCTGGTCCCCAACGCTGGACGGTGAGACCTCGCCCGCTTCGGTGGCGAATCCAAGACCAGCTGGGCTGCAGCCGCCAGATCCGTCCCC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCTCATCACCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 1006-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000056.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1005 29 96.6 32 ............................T GGCGGTCGGCGGTTGGGGCGAGCCATGAGACG 944 29 100.0 32 ............................. TGATGCCTCAGGTTCTGTCTCCGGCACGGGGT 883 29 100.0 32 ............................. TTGGTGCGGTTCCAGTTGCGGTGCACGTGCGG 822 29 100.0 31 ............................. AACAAAGACGGTGAGCGGACCGCAGAGCCAC 762 29 100.0 32 ............................. GGGAACAGCGGCCGATGGGTGTACAAGGTCAC 701 29 100.0 32 ............................. TCTCCGCTGCGGATCAGCTGCTGCGTTTTGGC 640 29 100.0 32 ............................. AGGCGGGTGGCCTGGTCCTGGAGCGGGGCCTG 579 29 96.6 32 ............................G CGTTCCGAGCAGCGCCGCAGGCGGAACGCTGT 518 29 100.0 32 ............................. TTGGGCCGACTGGACACGCCGTAGGGGCGCAG 457 29 96.6 32 ............................G ATGTCGGGCAGGATGTCCAGGTTTGGCAGTTC 396 29 96.6 32 ............................G CTGATCCAGCAACCTTACGCGGACGTTTTCGA 335 29 93.1 32 A...........................T TCCCGTTGAGTCCCTTCGGGCGCGACTCCGGG 274 29 100.0 32 ............................. AGGCCCTCCAGGCGCCTCAACACCGGGGACTC 213 29 96.6 32 ............................T CAAGTGGTTGCCCATGAGGATGCTTGGCTCAC 152 29 100.0 32 ............................. CATTCCGGGATGACGTCCCCGTAACTGTGCCA 91 29 96.6 32 ............................G TCCCTGTTGGGGGCAGCTCAGCCCATGGTTGA 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : GAACGGTCCGCCAGACCCCCACCGCGCGACCAGCCCAGACGGGCCCGCAGCCATCCCAACTGCGAACACCGCCACGCTGACCAGCAAGAACGCGAACCCCAGGAGGGCGCATACACGCCCAGGGCGTCCGTCCGCCGCCCGCCCCGCCGACCGACGGCCACTCCTCGCCAAGATCAACACGCTGTCACACTACGAGATCCACCGCCCCATCGTGATCTTGTTGACGAAGGAAGAAGCGCCGCCCCTCAACGTCATCAAAGGCGACGTCCGACACATGAGATGGGTTGGTGGTAGGACACCGGTCCGATGACGGTTCAGGATCTGATGTCAGCGGAATCAGCGACACTGCGACCGAGCATGATGTTCCCAACGCCGCCCGCACGGTCGGCAGGATCAACCCTGCATCCCGCTGCCTTGCCGCTAGACGCCCTGGGGTCCGTTTGCAACTCCAACTGAATGGAATCCTGGATTCGACACCATAGAATCGCAGGTCACAAAGT # Right flank : CG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 21921-21338 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000035.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 21920 30 100.0 40 .............................. ACAGCTCCCGGTCCCACTCAAACACCTTCCGGAGCGCCAG 21850 30 100.0 39 .............................. CGGTCACGTTCGATGACGACATCGCCGACGCCGCCGGCC 21781 30 100.0 37 .............................. GCCGTTCGTGATGGTGAACAGCGCAACCCTGTTAATC 21714 30 100.0 39 .............................. CAGACGATGACGGCGATGGGGAGGAAGAGGGCCGCCCAG 21645 30 96.7 41 ..............T............... CCGGACACCCGATCGGGCTGGTCACCGTCGATGTGCACCCG 21574 30 100.0 38 .............................. GGGTCGACTGGCTCACCGAGCTGCCGCGCGGCGGCCAG 21506 30 96.7 38 ..A........................... TTGCTCCGCCGGGTCCGCATCCATTCGTCGACCTCCTT 21438 30 100.0 40 .............................. AATGTTGCTGGCCAACGCAATGGACTACGCCGTCGAACTC 21368 30 86.7 0 .......G................G..CG. | G [21342] ========== ====== ====== ====== ============================== ========================================= ================== 9 30 97.8 39 GTCGCTCATCACCCCTAGAGGGATCGCAAC # Left flank : GCGGGACGGGGTGCGTAATGCACGGTGAGCGTGCGGGGTGGTTGGCACCGCCCCATGCGAACTTGCACAGGCAGCAGGCGGCTGCGCAAATCGAACAGGAGTTTCCAGAGGTCACCGCATGGTTCGGGCCGGCGACACGCACATGGTGGGCGATAGTCCCGCTAGGGACCGGGTGGCGGCTGGTGGAGGCTGTCGATCCGGCGGAACTGCGGGAAGCGATTCGGCGGCGGGCCATCTGGCCGTGGCCCCGCGGCGCGAGGCTGGTGCGGTCACCGTCGACGGCGCAGAATATGCGCCGGGGCATGTCGGCGTGACGTGGCGTGTCCGGTGTCGCGCTCGGGGCTGGGGCACCTTCGTACGTACCAAGCGCGGGAGGATTGATCGACACGGTTACTGCGATCACCACGCTGACCTGCGGAGTTGCACAACCGCCGGACCGCTGCAAAATCGACCACGAAACAAGCTCGTTTCGGCGACGTGACCTGGGACTTTACCCTCGG # Right flank : CTGCGCCATCCGGGTGGGGCGTGACAGTGTCCAAGCGGCCTCTCAGCACCAGTCGGCCGGCTGCGACAGCGTGATCATGAAACCGGTGCACCAACTTCAACGGGGGCAGACCGGCAGGGGGTCGCAGAATGGCTGCGGAGTGTGCAGGGTCGAGACGGTCGTGCAGGAAAGGGGTACGGAGGTGGACCGAATCTCTACCGATGGCGCTCGGGACGAGGGGGCTCAGTCACTCGGTTAGTCGCTCAGCAGTCGAAGGGCCGTGATCATCGATTGATGATCACGGCCCTGAGCTGGGTGGGCGCAGCAAGGATCGAACTTGCGACTCCTCGCTTGTAAGGCGAGTGCTCTACCACTGAGCTATGCGCCCGGAAGGGTCGGGGGTGAACCCGGTGACCGGGCAAGCGTACCCGGTCGGAGGGGGCGATCGCGAAACGAATATCAGGGTTGCGAGTCGGGGCGGTCCTGCTCGGCGAGGAAGCGTTCGAACTGCGCGGCGATCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 41278-41437 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000060.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 41278 30 100.0 35 .............................. CCGTCGTCACGGTGCACGGCGAGGACGGTCCGCTT 41343 30 100.0 35 .............................. TCTGAGGGGCCCGCAGGGTGGAGTGGTCAGTCCGA 41408 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 100.0 36 GTCGCTCATCCCCCCTAGAGGGATCGCAAC # Left flank : GCGGGGGACGCACCCAGGGGCGGTAGCTCAGCCGGTCAGAGCAGGGGACTCATAATCCTTTGGTCGCGGGTTCGAGTCCCGCCCGCCCCACCCGAGGTCGAAAGGCGCAAACGACCCCTGACCAGGAATCCCACAGTCAAGGGCCGCCGCGCGGCGCCGTCCAGCCGTCCGCACCCATGACCGTACACCACCGGCCACCTGTGCCGAATACGCGCCAAAGATGACGCCGCTCAGGTCGCCCCTCGATGCCTCGCCGTACGTTCTGAGCCGACCGTCGAGACACTCGGCGCAGGACGTCGACGTGTGTCTGCCCATCCGACCACCTGCGTGGGTGGGACGCCTCAGGGCATCGTTGGAGGGATGCAGCCTCGGCGGGAGGTGTCAGCGCCGTCGCTGCGAGCGCCTCGCTGACCTGCGGAGTTGCACAACCGCCGGGTCGCTGCAGCATCGACGATGGACCAAGCTCGTTCCGGCGGCGTGACCTGGGACTTTACCCTCGG # Right flank : TCACGCTACCCGCGAAGGGCACGTTCGTGCGCGGGCCGCGTCGCTCATCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCCCCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 151-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000062.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 150 28 100.0 33 ............................ CTGGTAGCCCCGCTGCGCCAGCGCGTCCGCCAG 89 28 100.0 33 ............................ GAGACCGGCGGGGCCCTTCCTGTTTCCTGCCTG 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTCGGCCCCGCACACGCGGGGATGGTCC # Left flank : GTGATGTGCACGCACTACATCTTTCTCGCGGACGACGTGCCCGTCATGCTGTCCACGAGCTGGGAGCCGCTGGAGTTGACGGGCGGCACGCCGGTCATGCTGCCCGAGGACGGCCCATACGCCGGTGCCGGTGTCGTGGCGCGGATGCGCGCGATCGGCCACGAAATCGGCATGGCGAGCGAGATCATTACGGCCCGCTCGATCACTGCGGCGGAGGCGGCCGAGCTGGACGAGCCGCTCGGGTCGATTGTGATGGTGATCCAACGGACGTACTCGACTGCCGAGCGGCCGGTAGAGACGGCGGACATCATCGTGCCCACCGACCGGTACGAGCTGGCGTACATGATCCCCGTGGAGTAACACGTCCGCCCATCGCGCGGACGGCACCGTCATGGCGTTGGCCTGAGGCCGTCGGGAGAGAAACGAGATGCAGCCAGAGTTGGCGAATCCAACTGAATGAAAACCTGTTATTGCCGTCGTAGACTCCCAGGTCAGTAAGC # Right flank : C # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3532-2831 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000062.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3531 29 100.0 32 ............................. CGGTAGGAGGCGTAGGCGGCCACACCACCGGC 3470 29 100.0 32 ............................. GAGACCGCCGCAATCTGGACGAGGGGGAGCTG 3409 29 96.6 32 ............................G CCAACGCACTCGATCTGCCTCCCGGCGTCCCG 3348 29 96.6 32 ............................G CCGCCGACGGGCGACTCGTCGTTCGGTGGCAT 3287 29 100.0 32 ............................. GCGCAGTATGTTGCGGCGCCGGTCAGCGCGAC 3226 29 100.0 32 ............................. AGTGCGAGCTGATTCGCGCAGAGCGGACAGCT 3165 29 100.0 32 ............................. CAGGTCGCAGGCGCGCAGACGGCCGAGACCAG 3104 29 100.0 32 ............................. GCCTGCACGCAGGTCCCGCACAGGTTCAGGTC 3043 29 96.6 32 ............................G AGGTGACTGAGCGGGTGGCGCTGGAGCGGCTG 2982 29 96.6 33 ............................G CGCGGCCCAGACCGGGAGGTCGCCGTGCTCGAC 2920 29 96.6 32 .....................C....... CACAGCTCGGGGGTGGTCAGGCGTCGGGGGCT 2859 29 93.1 0 ........................G..T. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.0 32 GTCGGCCCCGCGCACGCGGGGATGATCCC # Left flank : GTGGACATCTCCCCCGACATCCTGCTCGCCGCTCAGGACACCATCGTCCGCGACGGCCTACAGGACCGCCTGCCACACCTGACACTCGTCCGCGACCTACGACTGGACTTCCTGCCCGAGGCGTACTTCACCGTCGTGCACGCGCACAGCGTGTTCTCGCACTCCCCCATCCAAGTCATCGACGAGTGCCTGGCGAACGTCGGACGGGTGCTGGCCCCCGGGGGCTTCTTCGACTTCACGTTCAACCGCACCGAGGGCGAGGAACACAACGTCCTGCGCGAGGACTTCTACTACCGCACCGACACCCTCATCACACTCGCCGCCAAGCACGGCCTGACCGCCCACCTCATGGACGACTGGGAACGCACAGGCCACCGCCAGTCCAAGCTACGCGTCACCCACGCTCACCCCGACACCTGACCACCCGATGCGACCAGAGTTGGCGAATCCAACTGAATGAAAACCTGTCCTTGCCGTCGTAGACTCCCAGGTCAGTAAGC # Right flank : GCGTGCCCCCGGCATACATGGAGGTCGGAGCCAGCGGCCCCTGGCGGTGGCCGTCTCGCTGTTTGGTCAGTCAATGCAGCCGGTGATCGGCCCATCGGTGATGGTCATGGGGTCTTGCCCCTTTCTGACGCGCTTCGTGGTTGAAGTTCCGCGGCCGCGAATGCGCGCCCTCACCTCGAGGCCTCGGTAGCGGGGCGGGCCACGCCGCGCCGTGCCCAGCCCCGCCGTCTCGGGGCCGCACCCCCGAGGGGGAGACGCCAGCGGGCTGCGTCGGGGGGTGCGGCGTTGGTAGGGGCGGCGGCGTGGGACTTGGGGGAAGGTGCGCACCACGCGGCCGCCCCGGCTTACCAGTTCCAGTCGTCGGTGGAAGCCACCTGGTCCCGCAGCCGCGCCAGCAGGCCCCTGCGCCGCGGTTCATGACGGCGACGCGGCGAGGATGACGACTGAGACGGCGCCGGCCGCCATGCAGGTGCGGGCGGAGACCACAGCCCGGCCGTCAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19461-20746 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000071.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 19461 37 100.0 38 ..................................... CCTGTGTGCGTCAGCCGACCCGGGCCAGACCGGCGCAC 19536 37 100.0 37 ..................................... GTCGTCCCCGAGGTCGACGGCAAGGCGACGCCAGCCG 19610 37 100.0 39 ..................................... GTTTCGCTCACGCCAGCACCTCCTGACCGTTGAGAGGCG 19686 37 100.0 35 ..................................... GCCACCCTTGACGGGCCCCGTCCGGCGCTGGACAC 19758 37 100.0 39 ..................................... TTTCACCCTCCGCACAGTCGCGCACACACAGGGGCCCGC 19834 37 100.0 38 ..................................... ACGGTGAGCCGTCTCGCGCGCGCCTGGCGCGAAGCCAC 19909 37 100.0 37 ..................................... ATGGACCCGCCGGACCCGGGGAACCCGCCCTCGACGA 19983 37 100.0 35 ..................................... CAGGAGCTGTACGACAGCATGCCGGACCGGTCCGA 20055 37 97.3 34 .....A............................... ACTCAGATAAGCAACAGTCTGTTCCGTGATCCAC 20126 37 100.0 35 ..................................... TTAAAAGAGAGGAAGATGGGGCGCTGAGACCCCAT 20198 37 100.0 36 ..................................... CGTGACCGGCCCGCGCGGGGTGTGACGCGGGCCGGC 20271 37 100.0 36 ..................................... TCCTCTTCCTTTCTTTGGTGGGATGTGAGAAGTATC 20344 37 100.0 36 ..................................... GGCGTCACCTACCTGCACGGGCTGCCGTTGGATGAC 20417 36 97.3 35 ...............................-..... ACGCTGGTGGCGGGCAGGCCGCACGCGTTGCGGAA 20488 37 100.0 36 ..................................... GTCATCCCTGAGCCGTCCGGTGAGAAGGCCTCGCCG 20561 37 100.0 38 ..................................... GGCTTCATGGTCGGCAAGCAGCGACGTCAACTCCGGGG 20636 37 94.6 37 .................C.......A........... AAGGTGCCTATCGTCGTGCTGGCTCAGCCAAACGCGG 20710 37 75.7 0 ....T...............T..T.A....C.TTG.T | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 98.0 37 GTGGCGGCCGTCCTTCGGGACGGCCGAGGATCGCAAC # Left flank : ATGCCGCATCCTCGCCCGACATCTGCGTGGAGACCTCCCCGGCTATCTCCCCTGGACGGCCTCCTGATGGACCTCCTGCTGACCTACGACGTCGACACCACCACCCCAGAGGGACGCCGACGCCTCCGCAAGGTCGCCAAACTCTGTGAAGGTTACGGACTACGCGTACAAAAATCGGTTTTCGAGATCGTCGCCGACGAGGTGGACCTGCTGCAGCTCATCGACGACATCGACAACATCATCGACGCAGACAGCGACAGCATCCGTATCTACCGACTACCCCACGGAGGCTTCGAGAACGTACGCACCATGGGCGTCGCCCAACTCCAAGCCCATCGCCAAGACCTTGTTCTCTGATCAAACAGCGCGAGGTTCGGAACCCCAAGTACACACGCGACACACCGGTCACGCCGAAGGAAAATGTCCAAACAATCCGGTTTGTCTACGGGCTTGTCGACTCGCGCTCTCTACGCGATCGACAAGAACCCTGGTCAACCGGC # Right flank : TTGTGCCGCTACCCCCGCCGCTGCCCTGGCAAGACAGGGGCCGACAATTTGGGCAGCGAAGTCCAAGGCAAAGGATGATCATAACGGTCTTCACGCTGAGTATCGGGTGGTCGTGTAGGTGTTGTGCACGTGCAATGTGCAACCACGTCCATGACGTGCAGGCGAGCGTGAGGGACGTGCATTGCACGAACCCGTGCACGATTACGGAGAGTGGTCGGTGTGGTCGCTGGCGCGCCAGCGTCCGCGGCTGATCTGGACGGCTCGTCCGGCGGTCGCGTGGCCGTTGAGTTGGTAGTAGACCCATCGGCGGCTCTTGCCGGTCGCGTTCATAAGGTGCGGCACGGGGATGCCCTCCGGGGGAGCCGCTTTCAGCATCGCCCACAGGGTCGCCTCCGGTGTCTCCTTGGGCTCGGGCTGTGCGGTGGCCGGCTCGGGCTCCCGTGGGTTCTCGGTGGCGTGTGCGGTGGCGGCGAGTGTTGCGGCTTCCTCAACCGCGCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGTCCTTCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8525-8032 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000009.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8524 30 100.0 34 .............................. AGCAGCTTGTGACCTTCGTCGCAGGCGACTGGTG 8460 30 100.0 35 .............................. CTGAGGCGAACGATCATCATCACAGCCCCGCTTTC 8395 30 100.0 36 .............................. GTAATCTACATCCAAGCCGTCTCTACCGTATTCGGT 8329 30 100.0 36 .............................. CATGTCCCACGCCACCGGGTGCCGATACCGGCCCGC 8263 30 100.0 38 .............................. GGAAGAACTTCGTGCGGATGTCCTCTTCCGGCCGTCCC 8195 30 96.7 36 .............A................ CGCAGATCGCGGCCGATCTGGGCCTGGGCCGGTCCA 8129 30 96.7 39 .............A................ TGATCCACGCTGATGCGTTGCTTGCGCGCCTGCTTGCAG 8060 29 90.0 0 ...-.....................A.G.. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.9 36 GTCCGCTGATCACCCTGGAGGTATCGCAAC # Left flank : CTGATCACCCTGGAGGTATTGCAACATCTGAGGTGTCCACCCCCGGGCGCGCTCGACCGCGTCCTGTCGCTGATCACCCTGGAGGTATTGCAACGGGTGGGCGAGGGCGGCGCACCGGCCGGGCTCGACGGGGGTCGCTGATCACCCTGGAAGTATCGCAACTTCTGGGCGGCGCCCCTTCTTGTGTGAGGGTTCATGGAGTCGCTGATCACCCTGGAGGTATGCCAACGTGCCCGCAGTGACGCCGCAGTGTGCCACACAGAGGAGGGTGATTTGCTTGGAGGGAACATTACGGCTGCAGCTAATACAGGGCGCATGGACGGCACACCAGACAGGGCTCGCTTAATGGGTCCCTCACCGCGTGGCCCGGGCATCGCTTCGCTGGAGCGCCCTGTCCCCGTACCGCTCTGACCTGCGCGCTTGCACAACCGTCGGACTGCTGCAGAATCGGCCGCACAGACTGCGCTCTCCGTCACCCTGACCTGCGACTTTACCCTCGG # Right flank : ATCGTCACCGGCAGCAGTGGCGACATCAGGCCCACGTTGCTGATCATCCTGGAGTATCACGCGGTGCGTCGTTGGGTCTCTCCGGCATAGGGCGGGCCCGGCCTTCTAGGTCGGGCCCGCCTTCGGTGGTTACTCGAGTGTGGCGCCGGTGGGGAGTGGGGGTTCGGCTTCCAGGGCTTTGGCCTCCTCGTCGGTGAAGAGGCGGGAGCGGATCAGGAAGCGGACGCCCTCCGGGGCCTCCAAGGAGAAGCCGCTTCCCCTGCCGGGCACCACGTCCACGGTCAGGTGGGTGTGCTTCCAGTACTCGTACTGGGCCGCGCTCATCCAGAACGGCGTGTCGTGGTCGACGTGGCCCAGGAGGACGTCGGACGCGCCGACCGTGAACTCGTCACGCGGGTAGCACATCGGGGAGCTGCCGTCGCAGCAGCCGCCCGACTGGTGGAACATCACCGGGCCGTGCCGGTCGATGAGCTTGGCGAGGACGAGCGCGGCGGCCGGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGATCACCCTGGAGGTATCGCAAC # Alternate repeat : GTCCGCTGATCACACTGGAGGTATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 8796-10025 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000009.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8796 30 90.0 37 ....GC.......................T CCATGAACCCTCACACAAGAAGGGGCGCCGCCCAGAA 8863 30 93.3 38 .....G....T................... CCCGTCGAGCCCGGCCGGTGCGCCGCCCTCGCCCACCC 8931 30 96.7 39 .............................A GGACGCGGTCGAGCGCGCCCGGGGGTGGACACCTCAGAT 9000 30 96.7 34 .........................T.... ACAAGGGGAGAATCTCTGAGTTTCTCGCCACAAG 9064 30 100.0 36 .............................. CGGCGCGCGCGGACGTTCTGGCCGGGATCGTTAGCG 9130 30 100.0 35 .............................. CGAGGCGTACCAGCTGTACCGGCTCGGCCGGGACT 9195 30 100.0 37 .............................. GTGTACGTCGGCGCCTTGCTCGCGCCGAGCAGCACAC 9262 30 100.0 37 .............................. CTTGTACTCACGCAGAGCGTTCGCCACGGCCAAATCA 9329 30 100.0 34 .............................. CCGTTCAGGCCGCTGTCTATGCACGGCTGACGGG 9393 30 100.0 35 .............................. TCGGCGGACTATCCGGTGGACGTGATGGTGGGTGG 9458 30 100.0 37 .............................. CAGCCGGGACGGGTCCATAGCCGTAGCGTCCGCTGAA 9525 30 100.0 36 .............................. CTGTAAGAAGTCGCTGGCCACGATCAAGTTGCCCTC 9591 30 100.0 35 .............................. CTGTGGGGGATGGGCGGCGTGATCATCCACCACTG 9656 30 100.0 38 .............................. GTGTGGATCCACCAGCGGGACGGGGCGGACGGTTCACA 9724 30 100.0 37 .............................. CCAGCAGCGCGGCCGCCACCTGACGCGGCGCGTCCAC 9791 30 100.0 39 .............................. CAGCAGAGTCGTCAACGTCTCGTGCGCCGGACGGGCCAG 9860 30 100.0 37 .............................. AGGACTTCGTTCGGCGAAACCGGCGCGAGCTGGCCTT 9927 30 96.7 39 .............................A GGCGGAGCGGGAGGCGCGCAGCGCTGGCCTCCCGTACGG 9996 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.6 37 GTTGCAATACCTCCAGGGTGATCAGCGACC # Left flank : CATGGTTGCGATACCTCCAGGGTGATCAGCGGACACCGAATACGGTAGAGACGGCTTGGATGTAGATTACGTTGCGATACCTCCAGGGTGATCAGCGGACGAAAGCGGGGCTGTGATGATGATCGTTCGCCTCAGGTTGCGATACCTCCAGGGTGATCAGCGGACCACCAGTCGCCTGCGACGAAGGTCACAAGCTGCTGTTGCGATACCTCCAGGGTGATCAGCGGACCCGAGGGTAAAGTCGCAGGTCAGGGTGACGGAGAGCGCAGTCTGTGCGGCCGATTCTGCAGCAGTCCGACGGTTGTGCAAGCGCGCAGGTCAGAGCGGTACGGGGACAGGGCGCTCCAGCGAAGCGATGCCCGGGCCACGCGGTGAGGGACCCATTAAGCGAGCCCTGTCTGGTGTGCCGTCCATGCGCCCTGTATTAGCTGCAGCCGTAATGTTCCCTCCAAGCAAATCACCCTCCTCTGTGTGGCACACTGCGGCGTCACTGCGGGCAC # Right flank : CCGAGGGTAAAGTCGCAGGTCAGAGCGACAGACAGCGCGGTCTGTGCGGTCGATTTTGCAGCAGTCCGGCGGTTGTGCAAGTGCGCAGGTCAGCGCGGTGCGAGTTCCCAGCCGAGAGGCTCCGTCCAGGCCAGTCGGCTGACCCGTGCGACGCATCGCTCTGGCTGTATCACTGAAGCGGCCGTGTCGCAGCGGACGGCGACCTTCAAGGCAAGTAGGCGCGTGGGAGAGAACCCTGGGGATTCGGGTCTGCATCACAGGACTGGACTGGTGTTACCTAGGTCTTGTCCTATGGTTTGGGTTTCTATGTGGTGCGGGGATCGCGTCCGGTAGATCAGGACGCTGTCGTAGCTCGGGTCGATGTGTTGTTTCAGCTCTTCTGTGAAGGTGCGGTGTTGGGCCGCGGATAGTTCTCCTTGGAAGACGCTGCGTTGGACCCAGTGCAGGTAGCGGCGGCAGGTCCGGAGGACCTGCGGGTTGCGTTCGGCGAGGGTGTCGTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATACCTCCAGGGTGATCAGCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 3 20429-18854 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000009.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================= ================== 20428 30 100.0 35 .............................. ATCTGCGTTTCCTTCGTGACGGGGATGGCCTGGGC 20363 30 100.0 41 .............................. GCAAGTAGTAGACAGGGCTGTTTACGCCCCCGGGTTTACGT 20292 30 100.0 37 .............................. GCGTGCGCACCCACCGCGTCCGGTCAACCACCGTCAC 20225 30 100.0 38 .............................. ACGCCCTTGTAAACCAGCATGGCGTCAACCATGCCCTG 20157 30 100.0 39 .............................. ACTCACCCCCGCCCAGCGCGTCAAAACGGACAAAATCGG 20088 30 100.0 37 .............................. CCGACGCAACCAGCGGGTCCCCCGTGGTCACACGCCA 20021 30 100.0 38 .............................. CTCCGAAGCTCAAGGAAATCGCGGCGCTGGTGGTCAAC 19953 30 100.0 38 .............................. AAGTAGAAGCGGAACCCTCGGTCAATGAGGCTCATCAC 19885 30 100.0 34 .............................. CGCGCGCCCGGGAGCGCATCCAGGAGATCATCAA 19821 30 100.0 38 .............................. CTCCCGATCCCGCAGGTGAAGCAAGCGGTCGGGAAGTA 19753 30 100.0 37 .............................. GGAGACGCGGGGAGGGGTCCGACTTCTGTCCCCAGCC 19686 30 100.0 38 .............................. GCCCACCCCGGTTGCGCCGTGCGTGCCATCACTACCTG 19618 30 100.0 37 .............................. CCGCGACGGCCGCGCGGCTTGTTTCCCGGCGGCTCGA 19551 30 100.0 34 .............................. GGCAGGCCGACGACCGTGCCCAGTCCGACCCGGT 19487 30 100.0 37 .............................. GCTGGCGGCGCCTGTAAGAACAGCCTGGAGTGGTGCA 19420 30 96.7 38 ...A.......................... TCCGACGGGACCCGTCCGGACGCTTTCAGGTCAGGGCC 19352 30 100.0 37 .............................. CCGCGACGGCCGCGCGGCTTGTTTCCCGGCGGCTCGA 19285 30 100.0 39 .............................. ATGGCTGGAGGTCTAACGGGCTCCCGCGTGCGAAGGCTC 19216 30 100.0 33 .............................. ACACGGTGGTTGCTCTGCGGACGGCGCTTTCTA 19153 30 100.0 41 .............................. CTGCGGTGTTGGCGCTGGCTGAGTTCACCGCTCCCGTGCGG 19082 30 86.7 35 ...............CA.G.........G. GCCTTCGCGCGCGCCTCACGGGCGAGACGCGCCTG 19017 29 96.7 105 .........................-.... GCGTCGGTCCGCCCAGAGTCCCGGGCGTCCTGGAGCCAGGGGGCACTGATCATCTGTGGGATCGCAACTAGTTCCCGGCGGACAACGCGACGGGTACGCCGCTCG 18883 30 80.0 0 ...T.............CG..C..T...G. | ========== ====== ====== ====== ============================== ========================================================================================================= ================== 23 30 98.3 40 GTCCGCTGATCACCCTGGAGGTATCGCAAC # Left flank : CGCCCTACGGAAGACGAACCCGGCCTTCTACCACGCCAACATCGACGATCTCACTCTTGGGCCGACTGTTGACCAAGCCATAGACCCGCAGACCCTTCTAGAGCAAGCCGGCGATAGAGAGGTTTCCCGCAGTCGCTTGCGCAAGATACTCGCAGATCCGACCACCGGGGCCGCCTATCGCGCCATCATCAAATCCATATGCGAAGCCGACAGAGCCCACCCCACCGTCCCGGTGCAGACGGCTGCCCGCTCCCTGCACCTCACTCCGGAGAAGGCTCATGACCTGATCAACCAGCTAGCCCGTGAAGTCGCCAAGGCAGGCCTTGATTGGACCATCCAACTCGCCGAGACGTCATGATGCGGGAGCAGTCGTGTCGAAGCCTCCGCCGACCGCATCCGTTACCCGTCTGACCTGCGCACTTGCACAACCGCCGGACTGCTGCAAAAACTGTCGTCCGCGGCGCCCGAGCTGCCGCTGTGACCTGCGACTTTACCCTCGG # Right flank : AGGGGGGACAGCCTCGCCGTAACGTCTGCAGCGGGTCTAGAAGGGGTCAGTCTTGAGGCCACGTCTGCGCCGGGTCTCCTGGGCTTGGGATGCCTTTCTCTGCAGTCTGCAAGGACGCGCTTACCTTAAGGACTTTTGTGCAATTTCTTCCGATCTGACCGCTTGTAGTCCTGGCAGCTGTTTCTCAGGTGCTGATAGTCGAACTCCCGCCGAGACGTTGATCAACTGCCTTGATGATCTTGGGGGTTGTGTTGCTGGTAGTCGGTGGTCGAGGCGGTTCGTCCATCTGTTGTAGGTGAGAGTGGAAAGAGCGCGCCTTAGCAGGGACTGGGGGACCTGGTGGTGCATTCGGGTGAGATGGCCAGCGGTGGCCATTGGGGCTGGGGGCGTCGAGATGGTGCCAGGTCCTGTCGGCGGCGGCTGCTACCTCTGTCTCAGGTGCCCGTGAATCCGTGGAGATGGGAGGAAGACGCGGTGCGGTTCCGGGTGGACGTGGCGGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGATCACCCTGGAGGTATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 25981-25021 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000009.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 25980 30 100.0 41 .............................. CGTCCTCGTACGCGTCAATGCGGGCATCCAGGATCTCCCGG 25909 30 100.0 36 .............................. CCCAGCAGATCACCCTCACCGACGGGACGGGTGCCG 25843 30 100.0 34 .............................. ACCATGTTGTGACCGTCCCACTCGCGGCGCCCCT 25779 30 100.0 37 .............................. ATGACGTACCGGCCGCCCGCGGTGCGGTACAGCGCCT 25712 30 100.0 37 .............................. AAGGCGACCAGGAACCTCCCGGCCTCTTTGTCCTCGG 25645 30 100.0 37 .............................. GTGAGCGGGTCGCTGTTGAGGCCGCCGCTGGCCTCGA 25578 30 100.0 35 .............................. ATCAACAAGCCGGCGGGCGTGGCCGATGGCGACGT 25513 30 100.0 35 .............................. GCAAGGCCTGCACTGCCGTCACGGCGGCGGAGCTT 25448 30 100.0 37 .............................. TCCAGCGCAGCGATAGTGCGCTCAAGACTGCCAGCCC 25381 30 100.0 37 .............................. TCCAGCGCAGCGATAGTGCGCTCAAGACTGCCAGCCC 25314 30 100.0 39 .............................. TGGTGCCGGTGGTCGGGGCGTCGTCGTCGACGATCTCGG 25245 30 100.0 36 .............................. CGCCCCGGCCGGTGCGCGACCTTCCGCCCGGCGAAG 25179 30 96.7 37 .............T................ AGCGCGCTGATGGTGGGGCATGGCCACATCTCGTGGC 25112 30 100.0 32 .............................. TGGTCCCGCCAGGTGCGGGACCCGGCGACGAG 25050 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 15 30 99.8 36 GTCCGCTGATCACCCTGGAGGTATCGCAAC # Left flank : CCCCACTCCCAACCTTCAAGGAAGAGCGTTCCGAAAGCGACAAGAAACAACGGGCCAAGCGTTGATCAATCGAGACATCGAAGCGCGCTTGCCAGGCGGCTTCGTGCTGACCCGAAACGGCCCACCCTGCGTCCACGAAGGTCTTCCAGCAACACGTCGTGGCTGGCGTCGCCGTCGCCGCAGTCACTCTGGTTCCGGCGTGGGAAGTGCGACGCTATCCGGTGGACCAGGCAACTCCTCCTTGGTGGTCGACGGCCCATGCTGAGGTCCGTGTTTGTCAGCATCCTGCAGCTCAGCGTCCTTCTCGGAGTGGAGTGTTGCGGACTCACCTCAACACCGCCTCAGCACGCAGCGGGCGTTCGACGACCCATCTCTCGGTGGCCTTCCACAGCCGGTCTCATACCCGTCTGACCTGCACAGTTGCATAACCGCCGGACTGCTGCAAAAACTGTCGTCTACGGCCCCCGAACTGTCGCTATGACCTGCGACTTTACCCTCGG # Right flank : GGCCGCCGGTCCGTGACCGCCGCCCTCGCACCACTCACGTCCGCCACCTCGCGCAGCTTCGAGGCATCCGTGGGACCCGACGTCAAGCAGTGACTCGCCGAGTATCCCGGTGGGCTCACTGCCGCAAGGATCAGCAGGCGTGCACCGTGATCATGAAGGTTCTTGCGCAAATCACATCGGCATGCGGTGCCCCGGTCCGCCATAACCTGACCGGGGCACCGCGACCAGACGTATGACAGAGAATCCCGCCATGGCGTCCTGGAACCAGGATTCTCGGCGTTAGGAGTCGTCTCCCGGCCGCAACCATGCCCCATGCCGGCATCAGCCATGCCTCCTTGCCTCCGTCAGCCGCGCCTCCGGTCAGCAACAGCCCTCGGTCGCCTCACCGGCCCCGCACAGGACGTGTGTGTACGACTCCTCCAGGGCGGCGCGGTCCACTTCCGTGGTGCCGTCACCAACGGCCCGGACTTCCACAGTCCGCGGCGTCCCTCAGCAGCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGATCACCCTGGAGGTATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 5 39014-37919 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQU01000009.1 Actinomadura rubrobrunea NBRC 15275, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 39013 30 100.0 38 .............................. GTACTGCGCGACTATTGCCAACAGTACCTACATAACGG 38945 30 100.0 38 .............................. TACCAAGCCTCCGCGATCTCATGAGTCGAAAACCCGAG 38877 30 100.0 35 .............................. CGGCACCCCGAAACCGCCCCGCCGGATACTCACGC 38812 30 100.0 38 .............................. CACTCCTCACGCACCCGCGAACTCTCCCCATTCGGCCA 38744 30 100.0 34 .............................. GCGGCACGCGACGGCGACACCAACGGCGGCACGC 38680 30 100.0 40 .............................. TCTGCGGGCTTCTCAGGGCGTTCTAGGCGGGTTCCCACAC 38610 30 100.0 38 .............................. TACACGCCTAGCCGGGCGTTCCGCTGTACGCGCTTGAG 38542 30 100.0 37 .............................. ATCTCCTTCAGCTCCCGCGTCGTCAACTGCCGGTCCG 38475 30 100.0 38 .............................. TCGCTCGCGGCCGGAACCGGGGCCCGCCCGTGCACCTT 38407 30 100.0 35 .............................. GCGGAGCACACGCACAACGTGTTCCTGCCGCCCAA 38342 30 100.0 36 .............................. ACTAAGGCCAGAGCGTCAGTTTTATTTCCGTTTGGC 38276 30 100.0 36 .............................. GTAGACCAGCCGTCGGTAGTCCAGTCGTCTCTACAA 38210 30 100.0 37 .............................. CCTGACGGGTACCGCGCGGAGCATGGCTGGAGGCCGC 38143 30 100.0 35 .............................. TTCACGCTCAGCCGGTACCGATCCGGCTGTCGCAG 38078 30 100.0 35 .............................. CGCCGCCGCCGGCGGGATTGACCACGTCGTCGAAC 38013 30 100.0 35 .............................. GCGAGCAGCTCCTCAACGGACGGGCCGCTCTCCTC 37948 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 99.8 37 GTCCGCTGATCACCCTGGAGGTATCGCAAC # Left flank : AGGCGCCGTGGCTGACGGTCCCGGCGATGATCGAATACCTGCGTGCGGTCGCGCCGCGCCGGGCGTACGCGGTGCACGACGGATTGATCAACGAGTGGGGCCTGCGGGTCCTGGACGACGTCCTCGCCATGGAGGCCAAGAGGCCAAACGCCGACATCCGCCGCCTCATGCCAGGCGAATCCGTCGACCTCTGACCCCACCCAACGGTGTGATGCCGTCGGACGGCCCGCTGCTACCAGTCGCTCACGACCACGTTCGTGAGCGACAGGTCTGTTGGCGACATGCCCGTCCCAGACGACCTCGGCAAAGTACAGTCGACACCGTGGACCCGAGCCTTCGGCGCGCTGTGCCAAGCTCTCGTCGGGGCCGCCCGTTGACGCGAGTCTCGGTCGAAGACGATCAAGCTTCTGACCTGCGCTTCTGCACAACCGCCGGGTTGCTGCAAAACAGGCGGGCTGAGGCATCGTCACACCGTCTCCGACCTGCGACTTTACCCTCGG # Right flank : ATCAGAGCAGCCCAGGTCGGCCAGGTCGTCATCTCGTCGCGTCGCTGATCACCTTGGAGCTTCTTGGGGTCCTTTGTTGTCAGGCGGCAACGATGTGGTGGCCTGTGGTGTTGTCAGTGCGGGACACCCAATCGCGCCGCCATTCGCCGAAACTCCCGGCCTTGCGACGTGACGCGAGCCTGTTCGAGCATCACTGCGATCGTCTCGGCGATCTTTGGATCATTGCGGAATCGCTGCGGTGCCGTGTCCTCGCTGCGCCGCAGCCACCGGATGGCGTCATCTCGATACCTAGGGTCACGTGCCAGTCCGCGGCCCACATCCGCAAGGAAGCATGTCTTGCGACCGGGGTGATCGTCCAGCTTGGCCTCGGTGACGTCCTTCGCCAGCTCGGCGATCTCACCGCCGGCCTTCCCGATTTCGACGCCGACGGTGACGCGCCAGATCGCGACGTTCGTCTTGCTGAAAGCCTGCCAGTTGCCGTGAAGGTCGTCGGGGACGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGATCACCCTGGAGGTATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //