Array 1 213860-213527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000045.1 Streptomyces californicus strain TBG-201 396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213859 29 93.1 32 ............A.C.............. TGGTGGGTGGGCAGGTACGGCATCGTGATCGT 213798 28 82.8 32 ........A-..A.C.............C ATTCAGCACGCGCCAGGGATGGTTCTACCGAT 213738 29 96.6 32 ........................C.... ATGCCACCGGTCTGCGTGGTCACGTGCCGGTA 213677 29 100.0 32 ............................. GGCGTCGGGTTCGGCAAGGTTTACGGGGGCGG 213616 29 96.6 32 ..................A.......... GAGATTGGCGGCCGGTGGGAGGGAGGCAAGAA 213555 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.3 32 GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Left flank : CGTAGTTGACGCCGGCGGGAAGGGTGCCGCTCTTGGGGTCCCAGAGGTGGACCAAGTGGATGTCGCGCTTCTCCTGTGGTTCGTCCTCGTCGGTGGCATCTGTGGAGCGTGGTGTCAGGAGGCTCTGGACGTCCCGGACGATGCGAGGGAGGAGCTTGAGGAGTTGCAGGTCTTCTCGGAAGCGGCGTCGGGCTTCCTGTTCGGGGTTATTGGAGTTGTGGAGGGCGAAGGCCAGGGGGAGGGTGGTCTCGGCCTTGTAGAGGTCGGCGATGTCGCAGACGAAGGAGTGCTCCAATCGCATACAACACCGGCACTGACAGTGATACCGCTACTCGCAGTCCGACAGCCGCCAATCGGTCAATGACGGGCGTCGTGCTCGCCTCGACTACCTTGCAAGCTGCGCCTGGATACAGTGACGGCGTGCAACTGACTGAGCGCCTCACCCACTCAAGAATGGCAAAGGAAATGCAAAGCCACTCTTAAGGTGCAGGTCAGGAAGT # Right flank : CTGCGCGGGAGGGATCTCGATCAACAGCCCGGGCCCCGTCCGTTGCACCCCACGGCCCATCACCCGATCGGTGGCCAACTCTAAGAAGCCCACCATACGGCGTCCGAGGGTTGGCGGGTGCCGTCGGCTCACTGCCATCAGCGAAGACCGAGTCGTCGTCGATCCTAGGGACCCCACCATCCCGCAAGGCATCGGCCGAGCGCCAGCCGCTCGACTTCTAGGCTCCACTGGCCGCGCTGGAAACGAGGTCGTTCGACGCACCCGTACTGCCGTATAGAGCCGAAAGACTCCCATCAGCAGTGGGAGTGCCCTGGGACTCCCCTGGGACTTCCGGCCCCATCAAGCTGCACGAACATGAAATAGCCGAAAGGTCATTCGCGCAGGTCAGCCACCATTAACCGCTCATCGCGGCAGGTCACCGCATTCGCTGGTCTCTTCCGGGACATCTGACACGACGATGCCGCCGCACCCCGTCTGAACTGCCATTCAGCGGGTCAGGG # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGATGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.20,-12.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234649-234404 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000045.1 Streptomyces californicus strain TBG-201 396, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 234648 29 100.0 32 ............................. GACCTGACCGTCAGCCTGGAACGGGCCGTGCA 234587 29 96.6 32 ..T.......................... ACCCTAGGCCAGACGCAGTTCTACTCCCTGGG 234526 29 100.0 65 ............................. TACAGCGTGACGTTCACCGCGTCCTCGGAGGCGCCCTCCCCGCCGACGCGGGGACGGCGGAACCA 234432 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================================================= ================== 4 29 98.3 43 GTCCTCCCCGCCGCCGCGGGGGTGTTCCG # Left flank : CCAGCACACAGGCCGACAAGCGCCCGAGGGCGATCCGGTTCCCCGGCCAAGCCCATCCCATCAGCTATACGCACCCTCTGGTTCTCCGCCAGATAAACGTCCCACAAGTGGAGCGCCATCGCGGCCGCGTCGAGAAGATGCCTCACCAGCGGGTAGGGAGGCAACGCCGGATCCAGCCCCCGGGCCTTTCCCCACACCGACTCATCCACCACACTCCGCCTGTACAGCACGCCAGCCCTCTCCGCTCCACCACTCGAACCTGATACTGCAACGGAAGCGAAACCGCCACCCATCACGCACAAGCACCCGGCACTGACATTGATATCGCTACTTGCGTACCGACGGCCGTTCCTCGATCAGTAACGGAGCGCGGTGCTCACCTTGGCGACCTGGCAAGCTGCAGCTGGATAGAGTGACGGCATGCGTATGACTGATCTCCTCACCCCCTCCAGAATGGCAAAGAAAATGCAAAGCCCTTCTTAAGGCGCAGGTCAGGAAGA # Right flank : TCGTCGCTCGGCTCCCGGGCCACCTAAAGGTTGTCCCGTAACCAGGGTCTGGCGTCTCGCGGCATACTGGCGCTCGTTGATGACCTTGTTCGGCTGTGGGGGCGTTCGTGCTTGAGTTGCGGTGTGAGGCGGTCCGCTGGGCGGACGATGAGCCGTGGCCCGGGGTGGTCGAGGTGCAGTTCACAGACGCGGCGGGAGGGCGCTGGTCGCTGTTCGGCAAGGCTCCGATCTTCGCGGCGATGGGCGAGCTCGGCCCGGACACGTCGTATCCGGTTGAGGTCACCGTCGCCTGCGCGGTTGCCAAGGGTGACTGCCTGGCGGGAGACGGCGAGGTTGTCACCATCTCCACATCGCCGCACGGTGTCACCACGCCGGACGGACGCGAGGAGTTCACGGTGCGGCGGGACCAGCTCATCCGCTGAGCGCGAGGTTGTAGAGCCGCGCGACGCCTATCATCGCGTGGTGCACGCTGGCTCCGCGCAGGCAGCAGTCGCGCAGGA # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.84, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGCCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGCCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 235381-235714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000045.1 Streptomyces californicus strain TBG-201 396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 235381 29 100.0 32 ............................. CCGGACCGCAGGGTCGTCGGCACCTGCCTGGA 235442 29 100.0 32 ............................. GACACCCGCGAGGGCGAGTCCACCCCGCGCCT 235503 29 96.6 32 ..........T.................. CCGTCCCGCTGGTCGGGGTCGGGGCAGTCGGG 235564 29 96.6 32 ...........T................. ACCGGCGGCACCGGTGTGGCGGGCACCCCCAC 235625 28 86.2 33 .....T...A.......-...A....... GCAAAGTCGTGGGTGGGGCGCATCAGGCCCGCC 235686 29 93.1 0 ..G.....T.................... | ========== ====== ====== ====== ============================= ================================= ================== 6 29 95.4 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : CAGTATCAGGTTCGAGTGGTGGAGCGGAGAGGGCTGGCGTGCTGTACAGGCGGAGTGTGGTGGATGAGTCGGTGTGGGGAAAGGCCCGGGGGCTGGATCCGGCGTTGCCTCCCTACCCGCTGGTGAGGCATCTTCTCGACGCGGCCGCGATGGCGCTCCACTTGTGGGACGTTTATCTGGCGGAGAACCAGAGGGTGCGTATAGCTGATGGGATGGGCTTGGCCGGGGAACCGGATCGCCCTCGGGCGCTTGTCGGCCTGTGTGCTGGCCTGCACGACATCGGGAAGGTGTCGGGGTTCCAATTCTGTTCACGGCCGGCTGCGCTGCCGGGCTGACTCCGGTGGAACTGGAGCGTGCAGACTTCGCCGGCTGGCGGCGGGCAGCGAGCGGATGAGTGCCGAACGGGCCGGGCACGACGTGGCGGGCATGACTGCGGCGGCCGCGGTGCTGAAGGTCTTGGGCTTTCCGCGGCTCGAGGAGCGCCGGCTGCTGAAGGTGCA # Right flank : GTTCTGCGAGGCGGTACTGATATGGCACGCTGGTACGTGGACACGTATCTGCAGCAGGAGCGTATCGGCGCTCAGACGCCGAGTAGAGCTTCGCAGAATAGGCCAGGTGCTTAGAAGACACCTGCTCTGTTCTGGTGCTTCCACTCGTTCAGGGCTGACTATTCGACAGGCTGACCTCTGTGATTCCGGCGCCAGCATGGTGGTTCGCCGACGGCAGACACATTGACCCGGGAAAGGACTGGAACCGTGCGGTGAAGCAAGCGAACCTAGAACAGCTGCGGAAGAGTACGCGAGAGCGGCGCAAGGTAGCACGGGATCGCCGGTTACCCAAACCGGCGATTCTTCGGAGTATTGATGGTGTTCGGTCGCCGTGCGATTCGCCTGGGATGGCCGAACTGCTGTGTCTATCCATGCCTCCCCCACAAGGAGCTCTTCCATGACCGCAGTCGTCAATGAACAAACGTCCTATCTGTCCGATCGGCAGTGCTTTGCGATCCTGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1471175-1471528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000047.1 Streptomyces californicus strain TBG-201 398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 1471175 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 1471236 29 100.0 32 ............................. CAGACGGCGTTGATGCGCCCGTCGAAGTAGTA 1471297 29 100.0 31 ............................. CAGCCAGCCCACGATGCCTATCTCCGGTGGG 1471357 29 96.6 53 .......T..................... CGCGGGTGCGGGGGTGGTCCCGCCGACGGGCCGCCGGGCGGGACGAATCAGTT 1471439 29 93.1 32 ...G.....................G... GATCTCTGGGGGAGCGTCAAGCGCACCGCATC 1471500 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ===================================================== ================== 6 29 97.7 36 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : TGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGGGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACTCCGCCGGCTGACACCCCTCGGAAGTGCTATCGCCGGGCGTCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGGCCGGGGGGCTGCCGCCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCCGATCCCGGGGGTGCTGACCTCCGCCCACCTGGCAACCCATTTGAAACTTAAGGCCACATATGCCCGACTCTCAAGAAGTTCCCAAAAACGACCCCTCGGCCGGATAAACCCGCAGACCACGAAGG # Right flank : CCACGGGCTCACCCCGCCCGGCATCCTCGCGGCGGTGCTACCTGCGCGCGGGGGCGACCCCTCCACACCCCCGCCCGACTCCACCCAGCCGGGCCCCCTCCCCCATCGCGATACGTACACGCACGGCCCCCATCCACCCGGCAACACCGCAGGTCGCGTGCCCTACGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCGCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCGTGCTGTGGCCGGCCGACGAACCCTGGCCGGTCTGCACCGAACCGCACAAGCGCAGCAGCGGATACCGCATCGCGGACGTACGACGCGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAACGGGACCTGCTCAAAGAACTGGGCCGCAGGCACCGTCAGCGCGA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1475938-1476578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000047.1 Streptomyces californicus strain TBG-201 398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1475938 30 96.7 31 .............................A TGACCGTCATCATCAGCGCCGGGTGGTGCTT 1475999 30 100.0 32 .............................. GGGGGTCGCAGCACCCGGACAAGAGGAAGCGG 1476061 30 100.0 31 .............................. AATACAGCGTGATTTTCCAGCGTCTCGGCCT 1476122 30 96.7 31 .............................A GGTTGATGGCGGTTCCGTCAGCGCGATTCTG 1476183 30 96.7 31 .............................T GTCTGCGCAAGCGTGTCAGCGTGAACAGTTT 1476244 30 100.0 31 .............................. GGATCTTCGCGCCGAGGACCCAGCCGGGCGG 1476305 30 93.3 31 ............................TC CAGTTCGGTCTTCAGCGCGGCCCGGGCTTCG 1476366 30 96.7 31 .............................T GCTCGGCCCAGTCCGTGGCAGCCTGCTGTTC 1476427 30 100.0 31 .............................. CCGTACGCGCCTTCCAGCGCGCACAGGGGTG 1476488 29 90.0 31 ............AT...........-.... ACGACAGTGGTCGGCGCATCTGTACGACGGT 1476548 30 80.0 0 ...........C.GT...C..C.......A | G [1476561] ========== ====== ====== ====== ============================== ================================ ================== 11 30 95.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGACAAAATCCCACCCCACATCCCCAGGACAGCAGAATCCCGATCGCCGGGCGCCACGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACTCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTAACCCCTGCCTCACGGCTCCCGGTTGGGCAGGACGGGCACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGGCCCAGATAGGACCGGCGGCGGGCAGAATGGGCAACAGCCGAACCACACCTGACCACTTTGCGACGGAAGGCGAGATATTCCGGTTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCGCCTAAACCCCCAGGTCACGAAGG # Right flank : ACGGATGTTCGCGGTGCCGCTTCGGCCGTCCCGTGTTCCGTAGCCGCCCCCGGGCACTCGGCGCGACACCGGGCCGCCCCGCCCTCCCCACCCCCCTCCCAGTGCCCTACGGAGAGGCTCCCCGGTCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCTCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 314586-313773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000050.1 Streptomyces californicus strain TBG-201 401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 314585 30 96.7 31 .............................C CCGAAGCCGCATAACCAGCACCACTCCGCAG 314524 30 100.0 31 .............................. GGTCCACCTCGCCTGGGAACTCCCCGAAGAT 314463 30 96.7 31 .............................T CGGCGGCATCGCCGCTCCGTGCGGCCGGGAC 314402 30 100.0 31 .............................. GCACACGCGGCGGTCGACGTTGGGCCGTCCA 314341 30 96.7 32 .............................A AGGCCACCACCCAGATCAAGTCGTCGCTCGGC 314279 30 100.0 31 .............................. CCGTCCCTGACGACGTCATGACGCAGGCCAG 314218 30 96.7 31 .............................A TCACGTACCACGTGGCTGACATGACGGGCAT 314157 30 96.7 31 .............................C GGTCCTGCGCGACACGTACGGGGTGACGATC 314096 30 100.0 31 .............................. GGCTAGGAGAACTTCTTGAGCCCGGCCCGGA 314035 30 96.7 31 .............................T GGAGGCTGCGGCGCGAGAGCACGCCTGGCAG 313974 30 96.7 31 .............................C ACTCGGCGATCCCCATACGGACACGGGAGTT 313913 30 96.7 31 .............................C AGGCTGTCCTCATGGGTGGCCACCGGCTCAG 313852 30 96.7 22 .............................A CGGCACGGCTGCGCGCCGCCCT Deletion [313801] 313800 28 80.0 0 ........-...A.........C.A-...T | ========== ====== ====== ====== ============================== ================================ ================== 14 30 96.5 30 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACCGACAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCACCGAGCACCGCCAAACCCACCCACGAAGCCCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCACCACAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGGCGGCGAGCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGCCTAACCCCCAGGCGATGGGTCGTTGTTGGGCAGGACGGCCACACCGCACCCCGGGGCCGACTCCACGGAAGGCAGAGCCACGCCCCTTCCACCGAAGCCGGGACAATGAGACCAGTGGTGCGCAGAATGGCATCAGCCGAACCACACACGTGACCACTTTGCGCCAGAAGGTGAGATATGCCGGTTTCCCAACAACATGGTGAAAACCGTCTCCCCGTCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCGCCCCCGAGCGAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTTCCCCGTCCCGATGATCCCGTCCGGGTCCCGCAACCACACTTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGGCCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGTGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCGTGCAGATCGGGTACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 343460-343247 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000050.1 Streptomyces californicus strain TBG-201 401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 343459 30 100.0 31 .............................. ACCCTGTCTGTGGCCATCACCGCTGGCCGGC 343398 30 96.7 31 .............................C ACCGCCACTCGCCGCTCTCCCAGTACTCGAT 343337 30 96.7 31 .............................A GGTCCTGCCAGTCGGTGAGGGGCCGGACTTG 343276 30 76.7 0 .....................TCAACAG.. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCAACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAAGCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCAGCGTCTCGATGCCCGGCCTCTGAAAGTCAACCGACGACGGGCGACACACACCGCAGGTTGCAACCGCCGACCTGCGCAAGCACCTCGGGAGACCGCCATACCAGCCCCGAAGGAATAGCCGCACCCAAAGCGCACACCATCAGCCTCCGCCACCCCTCAAACCGTCGAACCCGCCGAACCCCAACCACGAAGCCCCTCCCGAAACGGAATAGGCACACCGCACACCGGGGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACATGCGACCACCTTGCCCCGGAGAGCGAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : CGAATGGTCGCGCGGCTCGCACCGCTGCCTGGACGAGGAACAGCCCAACCGGTCAGTACGTTTGGTCGTCTCCATCGTCATCCCTTGCGCGTTGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTGATGTGGAAGCTGTGGTTGCCGGGGTGGTCCTCGTACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACACGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCGCGGGTGGTTCGGTCTCCGCGGTCCACAGGCGGGACGCGTGCTCGGCGGTCTCGTCATGCTCGCCCAACTCGCATAAGACATAGGGCTTGTCTTCGAGGAGGTCTTCGGCGTCGTCGGGGCCGTCGTCCAT # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 432078-432474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDST010000050.1 Streptomyces californicus strain TBG-201 401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 432078 30 93.3 31 ............................TT CCGGGGGTGCCCCGGCCGCCGCAGGCGTCGG 432139 30 100.0 32 .............................. AGCCGCGGTACGACGCCTTGGTGCGCGCCTTG 432201 30 96.7 31 .............................G TCGGGTTGCGCAGCATCCGGGTAATGACAGC 432262 30 100.0 31 .............................. CCTTGCGCTCCCACGGGCGGCACAGCGGGCA 432323 30 90.0 31 ...........CC................T TCGAGCGTGGTGTCCTGACGTTCCGGGCCGA 432384 30 90.0 31 ...........TGG................ GCAGGGGCAGGAAGTCCAGGACTGCGTCGCC 432445 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== ================================ ================== 7 30 91.4 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Left flank : CGACAAGATTCCGCCTCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCATCGGAAGCCCTTCCTGACGGCCTCTGCCGCCCCTGCCACCGCGCCCACACCACGGGCGGCGACGACACTGCCGTACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCCTCGTCGGGCAGGCCGGGCTCACCGCACCCCCGGGGCCCACGCCTGCGAAAGGCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGATCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACTCTGCGGCAGGAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGTAAAAACCGCCTTCCGAGCACCTAAACCCCCAGTTCACGAAGG # Right flank : TGCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTGGCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGCGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGGCGAGTGCGGCGTACGAGGGTGGCGAGGAGCCCTGCATGCTGGACCGGGTCTGCCTCGAGTGCGGGCGGCTGTCGCAGGATCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCAGTGAGCCG # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //