Array 1 33653-31488 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXA01000027.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT490TT NODE_27_length_57161_cov_9.16721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33652 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 33591 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 33530 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 33469 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 33408 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 33347 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 33286 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 33225 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 33164 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 33103 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 33042 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 32981 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 32920 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 32859 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 32798 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 32737 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 32676 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 32615 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 32554 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 32493 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 32432 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 32371 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 32310 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 32249 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 32188 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 32127 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 32066 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 32005 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 31944 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 31883 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 31822 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 31761 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 31700 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 31639 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 31578 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 31517 29 96.6 0 ............T................ | A [31490] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51846-50415 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXA01000027.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT490TT NODE_27_length_57161_cov_9.16721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51845 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 51784 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 51723 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 51662 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 51601 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 51540 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 51479 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 51418 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 51357 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 51296 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 51235 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 51174 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 51113 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 51052 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 50991 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 50930 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 50869 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 50808 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 50747 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 50686 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 50625 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 50564 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 50503 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 50442 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //