Array 1 36523-37330 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFX01000041.1 Pseudomonas aeruginosa strain HUM-339 NODE_28_length_80318_cov_21.9392_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36523 28 100.0 32 ............................ TTGTTCCCGCGCGCGCTGGTTTCAGAGAGCGA 36583 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36643 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 36703 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 36763 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 36823 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 36883 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 36943 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37003 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37063 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37123 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37183 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37243 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37303 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47383-45855 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFX01000041.1 Pseudomonas aeruginosa strain HUM-339 NODE_28_length_80318_cov_21.9392_ID_55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47382 28 100.0 32 ............................ TGCTCGTTGCGCAGGTTGACCGGACGCTGCAA 47322 28 100.0 32 ............................ TCCAGGCTCCGTCGTCCTACGCCGGCGTCACA 47262 28 100.0 32 ............................ GAATCCGCCGAACAGTTCTGGCCGTTTGTCTT 47202 28 100.0 32 ............................ TATTCGGTGAACGATGGCGGCGGGACGAATCG 47142 28 100.0 32 ............................ GACGACGGCGACGCGCTGAGGCTGGCTGTGAA 47082 28 100.0 32 ............................ CAGTCAGAGGGGAACGACCCGGCTCCGGCAGA 47022 28 100.0 32 ............................ AATACGTATAGGTCGGCTCCAGTTTCATTCTT 46962 28 100.0 32 ............................ ACATGCGACCACCATCGAGAGGAAACGTGCTA 46902 28 100.0 32 ............................ TTAGGCCTTCTTAACGCCGCGCTTGCCCAGGT 46842 28 100.0 32 ............................ AGCATGTTAGCCGCCTCCGCTGGGATCATTGC 46782 28 100.0 32 ............................ ACTTACCGGGTAGCTGTACCTGATGACGTACT 46722 28 100.0 32 ............................ GCCAGGTGCGCGCGCGATGACGGTGAGCCTTC 46662 28 100.0 32 ............................ TTGACCCATCCCAGGATGTAGCGGACGACCGG 46602 28 100.0 32 ............................ TACGGACCCGACTGATCCTAAAGACCCTGGTG 46542 28 100.0 32 ............................ ACGGAAATTCTCACCCAGGCCAGCAGGCGTAT 46482 28 100.0 32 ............................ GTTGGCATTGACGAACTCTACATCGACGCCGT 46422 28 100.0 32 ............................ ATGTTCTACAACGCCGAGGAGCGCAGCTGGTT 46362 28 100.0 32 ............................ GGCTTGTCTGGGAATCGTGCGCGGTCTTCGAG 46302 28 100.0 32 ............................ TACAAGTTCAAGCGCGACGGCAAGGAATGGGA 46242 28 100.0 32 ............................ GACAAGAAGCTCCAGGGCACCGGCGTGAAGAT 46182 28 100.0 32 ............................ GGTGTCCTCAACGCGAAGCTGACCGAACTGAA 46122 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 46062 28 100.0 32 ............................ TGATTCAGGAGTGCTGGCAAGCGGTTACAGCG 46002 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 45942 28 96.4 32 ..C......................... TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 45882 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //