Array 1 241-31 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGGCJ010000103.1 Leptospira interrogans serovar Copenhageni strain B167 contig00103, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence           	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	==========================	====================================	==================
       240	    26	  96.2	    36	.C........................	AAACTCAATGTATCTTCTATGGTTGCTCTGTAGGTC	
       178	    26	 100.0	    34	..........................	ATGGGTCGGTGTTTAGGTTTTGGGACAGCTCTAA  	
       118	    26	  92.3	    36	.C...G....................	GAACTCAATGTATCTTCTATGGTTGCTCTGCAGGTC	
        56	    26	 100.0	     0	..........................	|                                   	
==========	======	======	======	==========================	====================================	==================
         4	    26	  97.1	    36	GGTGGAAACTCAGCAAACACCTCCCT	                                    	       

# Left flank :   AACTCAATGTATCTTCTATGGTCGCTCTGCAGGT
# Right flank :  TATGGGTCGGTGTTTAGGTTTTGGGACAGCT

# Questionable array : NO	 Score: 2.51
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GGTGGAAACTCAGCAAACACCTCCCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [2-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.37   Confidence: MEDIUM] 

# Array family : NA
//


Array 1 16300-16045 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAGGCJ010000034.1 Leptospira interrogans serovar Copenhageni strain B167 contig00034, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	====================================	=======================================	==================
     16299	    36	 100.0	    37	....................................	AAAGGATCCTTTGATCAAAAGAATTCGTCCTTGATTT  	
     16226	    36	 100.0	    39	....................................	GGACATAGGACCAAACTTCCCATAATGTATCGTTATGGG	
     16151	    36	 100.0	    34	....................................	AAGGGGAAAACATTCGTCACCCCGTGAAAAACTT     	
     16081	    36	  88.9	     0	.....................A........T..A.T	|                                      	G [16052]
==========	======	======	======	====================================	=======================================	==================
         4	    36	  97.2	    37	CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC	                                       	       

# Left flank :   AAATTGGCAAAAGTCACCGAAGAAGAAGACAATATATTTTATCTGACTCTTTGCACCAAGTGTGCTTCGGGCGCCCATACCCAAGAAAAAAAATCCGCGTGGCCAGAAGCTCCAAAAACATTAAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTACTTAAAAAGCAAAACTAAATCTTTGAATCTATATTTAATTCCAAGACATATCCAATCTTTACTCGGATTCAGAAATAGACCCTATCTAATGATTGGCCAACGCTCGTTTTTCTTTCTTGTGAAAATTCCAGCTAAATTTATAATCAGTGACGAGCTTAAACATACTTGAATCTTAATATTTGAAACAAAATGATCCTTGGAAACAAAATATGCACTTCTGAAAAAACCGAACATGAAAAATAACGATAAAAAACGATATACTTGTTCTCCTCCTTTGAAAACACTCATATCCACAATTTATGCTTATAAAAGCCATTTAAATAAAATGCT
# Right flank :  GAAGAGAAGATTTGTTTTGGCCCAAATTGTTTCGCACCAAACGTGCAAACAGATAAAATGTAGGAACTACTACTTTTTCGAAAAACAGTAGTTTGTTCAAAGAAATGTGGGAACTCCCACTTTAAAAAAAGTGAATTCTGGAGATCTCCTCGGGTAAGAATCGAAAATACCTAATTACAGTAGTAAACATAAATTTGTACTGACAATCATATTCCTCAGCACTTTGCCACTGTAATTGAAAGAACTGGTTACACAAATTCGATCTACCTCTGATGCCGTTTAGGCGATCCTTTCAGAAATTTCCAAATACTATAGAGAAGGTATATCATATTATAAACATGGCATGTTTTTTAGGGTATTTAAAATTATATTTTATTTTAATTTTAGAATATTCTAAAAATATTTTGTCTTTAAAAAATAAAATGGAATCCGAAAAATGAATTTCTCCGAGTATATTGTATGTCCATTCCGAACGTCATTGAGTTAAACTTTCCGGTCCT

# Questionable array : NO	 Score: 2.72
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGAATATAACTTTGATGCCGTTAGGCGTTGAGCAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.00,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,1.05   Confidence: HIGH] 

# Array family : NA
//