Array 1 1909981-1910874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015820.1 Bartonella apis strain BBC0178 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1909981 36 86.1 29 ACA.TC.............................. TTTTTGGAAATGGATGCGGATCTCGTTTT 1910046 36 100.0 30 .................................... GCGGTTTTAATTGCCTCAATTGGTTTCATA 1910112 36 97.2 30 .....................T.............. CAACTGGGCACGTACTGAACCCGATTGATT 1910178 36 100.0 31 .................................... CGCCGCCTTGCACGAGCACCATATGACCCTG 1910245 36 100.0 30 .................................... ATGCGATCGTAAATTGTTTCGGTCATATGC 1910311 36 100.0 30 .................................... TTTAATGCGAAATGGCGTTTGTATTTTCAT 1910377 36 100.0 29 .................................... CATTTGGTTCGTACAATTCTTACTGTTTT 1910442 36 100.0 29 .................................... GAGGGCATTTCGAATACGGGTAAATCCGT 1910507 36 100.0 30 .................................... AGAATGAAAAACGGGGATAAGTCAAGTGGA 1910573 36 100.0 31 .................................... TTGCCGAACAGCCGTAGGCGTTTACGATGCA 1910640 36 100.0 30 .................................... TTTTATCCCACCGATCTTGTGCATCCATCA 1910706 36 100.0 31 .................................... TGGCCAGTGAAAAAAAAAGTTAGCTTTGTTA 1910773 36 100.0 30 .................................... GAGCACATCCAATACCTCTGTGCGGTCACC 1910839 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 98.8 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGTCTATTTTACCCCACCACTCCCTATTTGCTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCGCTTGCCTTTTCCGATATTGCCAAAGAAGACATTAGTCAGGCAACGCCGATTGCCGCTGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCAGTTCTGGAAATTGCCAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTCGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCCTTGAACGAAAAAAGCAAACAATCCACCGCACAACACAGATGAAACCAAAACATATTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATCCACGTTTTCCCTGAAAATCTAACCATATTTTCACTTAAGTGCACAATCAATTTTCTTGTCCCTCAAGGTAGAAAAATATCGAACTTTCATCATTCGGTATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCCAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACTCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAATTCAACAAACAGTATCAAGAAGTAAGTAAAGATTGATTATGACGAAGTTTTACCGGCGTTCCGTCGCAACTTGACCGCGTTTTCTACTCTGTTACAACACGGAATTAAAACGACACCATACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 1911314-1911946 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015820.1 Bartonella apis strain BBC0178 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1911314 36 86.1 31 ..C..AA.........G.......C........... ACGGAATTAAAACGACACCATACAAAATATT 1911381 36 100.0 30 .................................... GTCACCGTCTTAAGAGACAGTGTGACTTCT 1911447 36 100.0 30 .................................... CTATTAGCGAAAATGGTAGCACGCAAATAC 1911513 36 100.0 30 .................................... TAAACTGATTGTTAATATTACCCATGTTGT 1911579 36 100.0 31 .................................... CCCGGTGGGTTGTCTGAATGTGTCGAAAGGT 1911646 36 100.0 30 .................................... ATTTCAGCAGAAAAATTCGACGAACTTATT 1911712 36 100.0 31 .................................... CTGCTCGGCTGGACGGCAGTTCATGCGATGG 1911779 36 100.0 30 .................................... CGGCCGCAACAATAACTATTTTTGTTTCTC 1911845 36 100.0 30 .................................... AAATTCGGCGTTCAGGTCAAAACAGAATGG 1911911 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CATCCAATACCTCTGTGCGGTCACCGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATCCACGTTTTCCCTGAAAATCTAACCATATTTTCACTTAAGTGCACAATCAATTTTCTTGTCCCTCAAGGTAGAAAAATATCGAACTTTCATCATTCGGTATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCCAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACTCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAATTCAACAAACAGTATCAAGAAGTAAGTAAAGATTGATTATGACGAAGTTTTACCGGCGTTCC # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGATATTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTGACGTGTCATCCACGTTTTCCCTGAAAATCTAACCATATTTTCACTTAAGTGCACAATCAATTTTCTTGTCCCTCAAGGTAGAAAAATATCGAACTTTCATCATTCGGTATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCCAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGGAAAATATACTGGAATTGGCAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAACAAGATTTTGCTACCGTTCTGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACGAAAAGACCGACGTCAAAACAACTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 1912384-1912551 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015820.1 Bartonella apis strain BBC0178 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1912384 36 100.0 30 .................................... GAAAAGACCGACGTCAAAACAACTGTTGAG 1912450 36 100.0 30 .................................... CAATGCTGGTATGAATCCACTAGTGAAAGT 1912516 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTCGGCGTTCAGGTCAAAACAGAATGGGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACCGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGATATTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTGACGTGTCATCCACGTTTTCCCTGAAAATCTAACCATATTTTCACTTAAGTGCACAATCAATTTTCTTGTCCCTCAAGGTAGAAAAATATCGAACTTTCATCATTCGGTATAACGACTTTACAGCAAATTTACATCAAACGTTGCTGGAAAATTTGAGAAAGCCAAAAAGGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGGAAAATATACTGGAATTGGCAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAACAAGATTTTGCTACCGTTCT # Right flank : CCGATGTCCGATTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTGTAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAATTTTCGATTTTTTTGACATGCTTCCACGTTTTCCCCGAAAATCTAACAAGATTTTCACATAAGCACACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAATATCGAAATTTCATCGTTTGGGCAAGGTTGTTGCGATCTTCTTAAAACTGGTTAGGCCAGCATGTTCGGGCTTTTTTTTTACAAAGACCTCATGCAATTTTGCGCCCCCACGGTTTTCAATTTTTTAAGAGAGCTTTCCGTTGTTAAAATGCTTGTGAATGCACCGTGCTATCTAACAAGCAGCCCGCTTAGATAAAGCGGACTTTAAGACAGCGTGTAAAACCGTAAGACAGCGTGATAAACCGTTTTTGCACATACGGTTTATTTCTGCCAATTTTTAAGCGTGGCTAAAATGAACGAGCCTGCTCCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.41%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 1915379-1916140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015820.1 Bartonella apis strain BBC0178 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1915379 36 72.2 28 TGGC............T.G...C......A..G..T ATTACGTGTTAGTTTATTGACACTTTTA T [1915381] 1915444 36 83.3 30 .....................T.........GTGTT CAGGCTGCAATAATGGCTTTCTTGACCATG 1915510 36 69.4 30 C....A.TC...T........A..GG.C.A..T... TTTCATTAGCATGTGTTAGAAAGGTGTTGA 1915576 36 100.0 30 .................................... GGATTGGAAAGGTGAAGACGCGACGTATAA 1915642 36 100.0 30 .................................... TATTTAACGACAGGAGAAGATGAATGACAC 1915708 36 100.0 30 .................................... ACTAGACAAGCACTTGAAGCCGCCTTTAAT 1915774 36 97.2 30 ..............C..................... AATGCAGACAAAGCGGAGGCAGCAGAATGA 1915840 36 100.0 30 .................................... TACACGGGCGTGTTGGAACCCGTCGTGGTT 1915906 36 100.0 31 .................................... TATAACAATTTATGGCACATCGACGCCTGAA 1915973 36 100.0 30 .................................... TTTTGGCGCGCACATAGATTGCATCATTCT 1916039 36 97.2 30 A................................... AATCAGTTAGCATTGCAATCCTCCAATGGT 1916105 36 91.7 0 ...............................G.C.G | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 92.6 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : CACAAATGTAGACACACTACGCCTTTGGCTGATTTATGCAGAAGTTTTCTTCACTTGTCAATCGACTAGCTTTAAAAAACCGGAAAGCTTTTTTGTGAATTAACCGGCAATCATGGCAAAAAACCGGATGCATTTGACAATGAACATTTTTTGTCGGGCAAAGAGCAATAGGCCAGAAAAACTCTGTTGCTTTTTAAAAACGCGCCCGTGGCCCCGCGCAAAATGAACAAAACAGATTTGAAATGGTGAGCGGAATTTTCCAAAAAAACAAAAAAGGGGCTTGTGTCAAAGCCAATTGCCAGCTATTTAGCCGCTAACGCGCTCGGATATTTGTTTAACAAACAACGTTCGCCTTTATGGAGAGGTGGCTGAGTGGTTGAAAGCACCGCACTCGAAATGCGGCATAGGGGCAACTCTATCGGGGGTTCAAATCCCTCCCTCTCCGCCATGATTTTCCTTTTTGTTTGAAACGACTTCTTTAGTTATGCGCCTATTCGGAA # Right flank : GCACAATCCAAAATCATCCTGTCAGGCAACCACTAGCCGCGCATTGACAACACGTCAGATGGTATTTAGCGACGCGTGTTTTTCGTGCCTTTGGAAATCCAAGCCCAAAAAAATGAAAACGTTGGCCATACTTTGCCAAACAACAACACGCGGCGATTTTGGAAAGTAAAAAGGGCACGACTATTTGTAAAGGCATTCGCGTCAAGTCGGAGTTTGTCCAACCCGCAGGCTGTGAAGCGAACACATGAAGAGAGTAAATTCAGTATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 5 1916904-1917268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015820.1 Bartonella apis strain BBC0178 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1916904 36 100.0 29 .................................... CAAATAAATATGTCAGCCGTTGGTTCTCA 1916969 36 100.0 30 .................................... ATTTTTTGGCATTGGGTCTGTTTACACGTA 1917035 36 100.0 30 .................................... GCTCTTTGCCTACACCGACTGTACGTATTT 1917101 36 100.0 30 .................................... CGTTCGTACGATCACCCGTTAGCCTAATAT 1917167 36 100.0 30 .................................... ACAACAAGTGATGGAACAGTTGTCGCCGAA 1917233 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGATGCGATGGTTCGTTGCCTCGCCCGGTGTGACAAATTCTAGATTGTCAGGACGGATGGAAGTATCAAGTAGATTAGTCTGATAATTCTGCCGTGGTTCAGGATTGATTGGGTGCTCGGTGCGCCGTCTTATCACGTGCCCAAGCTTTCCTATTGCAGCGAAGCAGCACAGTATAAAGCCAACCAGAAGCCATATGCTCACTATTACATCCATTTTGTTCCTCCCCCTGCAATGCTACACCGTTTAAACATTTACACACAATAGC # Right flank : CCGATGTCCACTTAACCCTTCGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //