Array 1 18216-16729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWON01000003.1 Neisseria meningitidis strain NmGX2002-2 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18215 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18149 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18083 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 18017 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17951 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17885 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17819 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17753 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17687 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 17621 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 17555 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17489 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17423 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17357 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17291 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17225 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17159 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17094 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17028 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 16962 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16896 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16830 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16764 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //