Array 1 275989-274721 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJH01000003.1 Streptococcus agalactiae strain M48 NODE_3_length_292333_cov_140.692095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 275988 36 100.0 30 .................................... CGTTGTCTCATTATTTGATAAATATTTATC 275922 36 100.0 30 .................................... TTCCCTTGCTAATATTAACTTAGGAGCAGC 275856 36 100.0 30 .................................... AAATACAAAAGGTGTTACTGTTTACAACGA 275790 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 275724 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 275658 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 275592 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 275526 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 275460 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 275394 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 275328 36 88.9 8 ................................CTTA GGAGCATC Deletion [275285] 275284 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 275218 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 275152 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 275086 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 275020 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 274954 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 274888 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 274822 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 274756 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.4 29 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : GATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //