Array 1 108714-107829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQXY01000050.1 Salmonella enterica subsp. enterica serovar Blockley strain CRJJGF_00147 SQ0195Contig51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108713 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 108652 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 108591 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 108530 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 108468 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 108407 29 100.0 32 ............................. GCTCTTTCTCCGTTAGTGTGAATTTCGTCTTC 108346 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 108285 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 108224 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 108163 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 108102 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 108041 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 107980 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 107919 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 107858 29 93.1 0 ............TC............... | A [107831] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126720-124984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQXY01000050.1 Salmonella enterica subsp. enterica serovar Blockley strain CRJJGF_00147 SQ0195Contig51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126719 29 100.0 32 ............................. GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 126658 29 100.0 32 ............................. CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 126597 29 100.0 32 ............................. TTACCTGCACTGCGCCAGCGATTTTCTATTAA 126536 29 100.0 32 ............................. ACTTATTCGACGGGAAAAGCATTGATGTTACT 126475 29 100.0 32 ............................. GAGCCAGCCCTGCCAGCTTTAACATGCGCTGA 126414 29 100.0 32 ............................. CTGCCCGTCTCGTTGTTAATCGGGTTACCGTA 126353 29 100.0 32 ............................. ATCTGGCTGTACTGGCTGGCGGTGATTTCCTC 126292 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 126231 29 96.6 32 ...............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 126170 29 100.0 32 ............................. GCACGGATATGGTTGACTGCATTTCGCTGAAC 126109 29 100.0 32 ............................. GATGCGATCAGGCTGGCGATCAAGCAGATGTC 126048 29 100.0 32 ............................. ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 125987 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 125926 29 100.0 32 ............................. TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 125865 29 100.0 32 ............................. GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 125804 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 125743 29 96.6 32 ..G.......................... AATTGATCACAATCCTGTATAAGCTGCGCAAA 125682 29 96.6 32 ..G.......................... AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 125621 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 125560 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 125499 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 125438 29 93.1 32 ..G.....................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 125377 29 93.1 32 ..G..........T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 125316 29 89.7 32 ..G..........T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 125255 29 96.6 32 ..G.......................... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 125194 29 96.6 32 ..G.......................... CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 125133 29 96.6 32 ..G.......................... TGGGACATTCTCGCTAGTCACGGTCATGTCAT 125072 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 125011 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 97.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //