Array 1 17370-17136 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIIH01000005.1 Streptococcus suis strain LSS83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17369 36 100.0 30 .................................... AATAAAACTGCCATACACTGACAATTACTG 17303 36 100.0 30 .................................... GTTTAGTGGCGATATTATCTTCGGAAATTT 17237 36 100.0 30 .................................... TTGCAAAAGTTGCTAGCATACTAGGGTTCT 17171 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : AAAGAAGAAGACCAGGTAGATAGCCCAATGTCATTAAGTTAACTAACCTATCACGTTTTGTGGTGGGTTAGTTTTTATGTTACACTAAAAATAAAAGGGGAAAAGTCATGCTAGATCAGATTAAAGCTCATTTACTTGATAGTATTAACGACATCGTTTCTAGTGCCAATCAGTTTGTGCTTCATCCTGAAAAAGATTTTAGTCGGCAAAGTCAGCTAACTATGAAAACCATGATTCAAGCCATACTGACCATGGGTGGTAATACCTTAGCCAAAGAGCTACTTGATTTAGATTTGCCTGTCTCTCAATCTGCCTTTGTTCAACGACGGTATCAGATTAAACACCAAGCTTTTAAAACACTTTTTAGGGATATTACTTCTAAAATTCCAATCTCTGATAATCTCCCTATCCTGGCTGTTGATGGCAGTGATGTGATTCTACCAAGAAATCGTTTTGATAAAACGACCTCTTTTCAAACTGGACCACATCACACTCCTTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 99-728 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIIH01000006.1 Streptococcus suis strain LSS83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99 36 100.0 30 .................................... CAATGACGATCTGAGCAACATCTGCCTGCT 165 36 100.0 30 .................................... TCACGAATTGAGCCAGTGCCAACAGCACCA 231 36 100.0 30 .................................... TTTAGAAAATGAAAAAGAAGAAACAGATGA 297 36 100.0 30 .................................... TCAATACGTGACGTATATTTCATAGGTTCG 363 36 100.0 30 .................................... GGGAAGTCGTGTATATGACTTTTTCACACT 429 36 100.0 30 .................................... ATTGGTTGGGTCCCGATAAACAAATGATGT 495 36 100.0 30 .................................... AAAGAAGAAGACCAGGTTGCCATTGAGACC 561 36 100.0 30 .................................... TAATTATCTCTTTGGACCGCATCGTGGCCA 627 36 100.0 30 .................................... TAGTAACAAATAAAGAAGTAAAAGAGGAAA 693 35 83.3 0 .......................T..T.-....TCA | T [715] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAAACTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACATTGGGTTGCCATTGAGACCG # Right flank : ATAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //