Array 1 393869-391407 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUJ01000003.1 Pseudoalteromonas luteoviolacea strain IPB1 Plut_IPB1_scf003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================== ================== 393868 29 100.0 32 ............................. CTTTCATCGATGATGTTTTCTAAATCGGTTTT 393807 29 100.0 32 ............................. CACGTTAGTTTGGTGTAACTTTAATCGCCCTG 393746 29 100.0 32 ............................. AACTAAGGGGGGCTAAGTTGGAATATAAAGGT 393685 29 100.0 32 ............................. AACTGCGTGCCAATGGGCCGATTTACTTTGCA 393624 29 100.0 32 ............................. ATGTAGTTACTACGGGGGATTTGTTTGCGAAA 393563 29 100.0 32 ............................. GTTAAGCCAGTACATGCAATCATAAATTACAA 393502 29 100.0 32 ............................. GTTGCCAGTATCGTGAGATTTTCTCTCGGCCA 393441 29 100.0 32 ............................. CTTTAACTTTGTAGGGTTTGCGGTTTGAACTC 393380 29 100.0 32 ............................. GCGGCTCCGTATTATGATGGAGGTCATTTCAA 393319 29 100.0 32 ............................. TTTGAGAACACGGCCTGTAATTGTGTCGTATA 393258 29 100.0 32 ............................. CAACTGCGTCACCGATACTCTCGTCCTCTGGC 393197 29 100.0 33 ............................. CCAATATAGGAGTTTGCGTAATATTTAAGAGCG 393135 29 100.0 33 ............................. CGCAGCGACTTGGACTTTGCATTGCAGCGATAT 393073 29 100.0 32 ............................. AGTAATGAGTAATTGATGGATGATACTTGACC 393012 29 100.0 32 ............................. ACTAAGTGATGAATTCATAGAAGTGACCAACC 392951 29 100.0 32 ............................. TGCAAATTAGATTTAAAAATGGATAGGGATGG 392890 29 100.0 32 ............................. AACCAGGACTGAATGAATCAGCTCTTCTGAAT C [392876] 392828 29 100.0 32 ............................. GCTTGCTTTCCCCGCTCCCGGGCTTGTTGCAA 392767 29 100.0 32 ............................. TTTGCAATGAACACATCAACACTCACCGCTTT 392706 29 100.0 32 ............................. TAGTGAACTTGTTATTTTCTACAATTAATAAC 392645 29 100.0 33 ............................. GGGATCACGATTTGCTTTGCCACTTTTGACCGC 392583 29 100.0 32 ............................. GTCGTAGTTGAGGAGGTGGCTTTATTGTTTAT 392522 29 100.0 32 ............................. TGTATCAGATTGGTTCTGTTCAGCCGTTCATC 392461 29 100.0 33 ............................. TGTTGTTAGGATAAAATGTCGCTCTTTGCTAAC 392399 29 100.0 32 ............................. CTATCGAGTTTGCCCTTACTGAATCAATCAAA 392338 29 100.0 32 ............................. ACCAGGATTATTTCGTTCAGTATGTAGAATGA 392277 29 100.0 32 ............................. CGAGGCAATATAATATATCCAAAAACATTGTC 392216 29 100.0 32 ............................. TATATCGTTATCGGCTCTATGTTCAAATACTT 392155 29 100.0 82 ............................. CTATCTCTGAGCTTGTAAGAGGGGTTAGAAAGGTGTTCCCCGCTAAACCGCATAGACTTGTTGGCCTTGGCGCTTCATCCGA 392044 29 100.0 32 ............................. GAATATGTAATGGACTTAAAAACACCCGCTGA 391983 29 100.0 32 ............................. CGATTGCGGATATTCTCGAATTAACTTCGGGT 391922 29 100.0 32 ............................. GATTTAACTGACTTGCGTAAAGCTCGCTGGTC 391861 29 100.0 32 ............................. CGTCGAGCGTAACACTATTTTGCTCATACACT 391800 29 100.0 32 ............................. AATTCACACATCTGCTTTACTTCAATTTCTGC 391739 29 96.6 32 ....................T........ GAGTAAAAATTGCACTATAAAAAGTTGAACGA 391678 29 89.7 32 .........A..TG............... GATTAAAAGTTGCAGTATTCGATTTAGATCCT 391617 29 93.1 32 ............TG............... AATTGACTGTATTTCTCTACTTCACACACTTC 391556 29 89.7 32 ............TG.............T. GAGGGCGGTATTAGTACCGCGCAATTATGAGC 391495 28 86.2 32 .............G-.TT........... TTATTCGCAGTTCTTATGATATTCAATCGGCT 391435 29 72.4 0 ............AG......A...CTTAA | ========== ====== ====== ====== ============================= ================================================================================== ================== 40 29 98.2 33 GTGTTCCCCGTACACACGGGGCTAAACCG # Left flank : CGTATGAGGATGCACAGCCTCCGGCAATTCCTGAACCAGAATCTATTGGTGATGATGGCCATCGCAGCGGTGGTCCGTTATGAGTATGTGTGTTGTTGTAACAGAAGCTGTACCGCCTAGATTGAGAGGAAGGCTTGCTGTATGGCTGCTTGAAATCAGAGCGGGCGTATATGTGGGCGACATTAGCCGCCGTGTTAGAGAAATGGTGTGGTTTCAAGTCGGCGAGTTAGCCGAAAATGGTAATGTAGTGATGGCATGGGCAACTAATACTGAGTCCGGTTTTGACTTTGTCACTTACGGAAAAAACGCCCGAATGCCAATTGATTTTGACGGATTGAGGTTAGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATGATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAACCCTCGTATTGTACCTAAAATTTTTGGTAGATTTTTATTCGTTAAATTTACTTATACAAATCAATGGTATAAATTTAGA # Right flank : AGAGACGAGTTTATGGTCACGTTAAAATGGGTTGAGTAAGCTTTATACAAGAAAATGAGTCTAACAAGCTGATATCTTTTCTAAGGGCTGAGGTGCGGGGTTTAGGCACTTATGGAACTGTTTCATAAGTCAATTTTGTTATCTACGCAATGAATGAGCCTAACTTAAGGAATGATTTTTTATTAGGTTTATGGTTGATTTGTTATTCTTTGTTGGTATTTTGTAATTAATTTATAAGGAAAATAATTGGCCAACCTAGCATGATAAACAATAAAAAATTACTCCTTTCAGTACTTGGTACGCTTTTTCTCGGTGCTTGTAGTTTAAATCAAAATCCCGAAGGCTCATATAGTGGAGATGACAGAGTCAATATGGCGGGAGCTGCACAACTATTATCACAACATAGTTTTGTGACGATTGATTTAGCGCCCCTCATTGCAGATATGACGAGAAGTCAACTGGGTCATGAAATGTATGAATTGTCGTATGGTGCGAAAAAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 405655-404344 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAUJ01000003.1 Pseudoalteromonas luteoviolacea strain IPB1 Plut_IPB1_scf003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 405654 29 100.0 32 ............................. CTAGGGCGCTGGCCCAATGGCATAGCTTTGAA 405593 29 100.0 33 ............................. CACTCTATTCCGTTTGAAAACTCGCTATATGCA 405531 29 100.0 32 ............................. CTCTTTTTGTATTTGTTCTTCGATGCTTGTTG 405470 29 100.0 32 ............................. CGCTTGGAAAAAGAGACTAGACCGAGAGAAAT 405409 29 100.0 32 ............................. GCTTTAAAAGCAGGGCGCGCAACGCGGCAGGG 405348 29 100.0 32 ............................. CCTATCCTGCACCCAATAGGAGGGGTTATGAA 405287 29 100.0 32 ............................. CCCATTTTGGACATCATGTACGATTCTCTAGC 405226 29 100.0 32 ............................. TAACTCAAACCAGACTGCTGACGCTGATTTAT 405165 29 96.6 33 ............................A GTAGCAAACGCCTGTGGTGTGGTTGAGTTATAC 405103 29 100.0 32 ............................. GCAAAGAGCGCGTGTTCAATATGGCGAAAATC 405042 29 100.0 32 ............................. TTTCTGTGTCTTCTTCATCTGCACCTGGTAAT 404981 29 100.0 32 ............................. ATGCCACAGCAGAACGCACTCGTATTGCTGGC 404920 29 100.0 32 ............................. CATATGCGCATGATAGTTCTGATACCCGAGTG 404859 29 100.0 32 ............................. TGACTTGTTTCAATTTGCTCTGCGGCAAAATG 404798 29 96.6 32 ..........................T.. CATATATCAGTGAGGTGCTGTAATGGCAGGTC 404737 28 96.6 32 ....................-........ GACATCGATGCTGGTCTCCTGAGAGATAAAAT 404677 29 100.0 32 ............................. CTAACCCTGCAGCTAATACAGACATCACCATG 404616 29 100.0 32 ............................. AATTGCCCCCACGCTTTGTGCAATGCGAAGAG 404555 29 100.0 32 ............................. TATTTCATTCGGGTTCATAGTTTACCTTCCTA 404494 29 100.0 32 ............................. TCTCTTTTTTCTATATTGTGTTTGCAGAAATT 404433 29 100.0 32 ............................. TCAAAAGCCTCTGCGATGCGCGTTATATTAAA 404372 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGTAAGCACGGGGCTAAACCG # Left flank : CCACTATGTGGCCTTTTTAAATCAATACTCCACCCGAATTTTGCCCGGTTCCGACTTTGTAGCAACCGACACCAAACGCTTTAAACACTATGCCAAAGAAGTTGAGCTGACGAGTTACATCAACCAATTTTTAGACGATAACGCATTTCGCAATATCGCCCTTGGCCAAAACTACTTTGACCTGATGAATTTGGACTTCGAAGCCCCCGTGATTTGTGAGGAGTGAGGGGGTATACGTTTAATGAAAAGCAAAACGCATAATTAAAAACGCGCGAGTCATTTAAGTCTGTATCTTTTTTCATCAAAAAGATAAGGTTGTAAGTGCTTGGAGAGCTTTTACTTATTTAGAGTAAAACTGATTTGTTCTTTAAAAATTTGGGAAATAAAGGGGAGGGTTTTTGTAAACTTCAGTGTTCCTTGACCCAAATTTAGTACCCATAATTTTTGGTAGATTTTTAATAACTAATTTTACCTAAATAAATCAATGATATAAATTTAGA # Right flank : AGAGATAACTAGAGCTGCAAGAATTTGTATCTTTTTGAATAACACTAACAATATAAATCGCGTCAGTCTGAGCTTGTCTAAAAAACCATTATGTTGATCAAAAGCGAGAACACTTGAGGCTAGTCTTTAACAGAATGTATGAGCAATTGAACACAAGCACAATATGAGCAGTGCTTAAATTTTGTCGCAGGTCAATGACTTCACCGCCTTGTTTTGATACATTTTATTTACTTTTATATTACCAAAAGTGATTTATGCAGGCTAAGGAACAGCAATATTTTCGATACATTGAGGCGGTGTTATTCTGGCACGGAGAAATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCGTCGCAAGACGCTATTTAACAGACTTTATCGCACGCTATCACATTGACGCACATTACAACGAGTCTGAAAAAGCTTATGTATTGGCAACCCCCTTTACACCGAATTATATTTCCCAAGACTTTACCGAGTATGCCAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //