Array 1 286539-288154 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSI01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 58 NODE_2_length_497472_cov_29.7377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 286539 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 286601 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 286662 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 286723 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 286784 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 286845 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 286906 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 286967 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 287028 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 287089 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 287150 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 287211 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 287272 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 287333 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 287394 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 287455 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 287516 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 287577 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 287639 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 287700 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 287761 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 287822 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 287883 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 287944 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 288005 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 288066 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 288127 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 304437-306334 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSI01000002.1 Salmonella enterica subsp. enterica serovar Infantis strain 58 NODE_2_length_497472_cov_29.7377, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 304437 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 304498 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 304559 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 304620 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 304682 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 304743 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 304804 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 304865 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 304926 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 304987 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 305048 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 305109 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 305170 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 305231 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 305292 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 305353 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 305414 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 305475 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 305536 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 305597 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 305655 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 305716 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 305777 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 305838 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 305899 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 305960 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 306021 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 306082 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 306183 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 306244 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 306305 29 93.1 0 A...........T................ | A [306331] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //