Array 1 190065-189765 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWL01000008.1 Streptococcus gordonii strain M99 Contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 190064 36 100.0 30 .................................... ATTTGATATTCCGTTCTTTAACGCCTGCGG 189998 36 100.0 30 .................................... ATAGACCACATATGCACATAACTGGCATTG 189932 36 100.0 30 .................................... ATAGCACTCTTTATCCTACAGCCTTCCGAC 189866 36 100.0 30 .................................... GATTGGTCGCAAGCAGATGAAGATTCTGGA 189800 36 80.6 0 .........................G.G.AATT..G | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.1 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TCTCAAGATTTAAGTAACTGTACAACTTACCGTCTGTATCTTTGACAAAACCTTC # Right flank : TTTTTCTTTACGAATCTATCCAAAAAAACCACCTATTAGGTGGTTTTTTCAGTATCTATCACTGCTTACTAGAAGAAGAACTTGAGCTGTTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGGAGCGCTCGATAGCTTGGAGCATTAAAGAGGTCAATGGTCGATTCACCCTTGCGTTGGCTGTAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAAGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTCGTAGAAGCGAATTAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCATTACGAATATCATCCAGTTCTTTCTTGATGGTTTCGTCTGGATTGGTAATTTCCTCACCGGTTTGAGTGTAGTAGGTCCGTCCGTTGAAGCTAGTGTATTTTGGTGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 129048-129542 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAWL01000009.1 Streptococcus gordonii strain M99 Contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 129048 36 100.0 30 .................................... CCCGTGCTTGGCTTGACGGCTACGAGGTTG 129114 36 100.0 30 .................................... TCTTCTAGGCAATTATGTACACAGCTATTT 129180 36 100.0 29 .................................... GCTGTTAGAAATGATTAAGCAAGAGTTCT 129245 36 100.0 30 .................................... AGACACATAAGAAAGCGCCTAGTGTGTTAT 129311 36 100.0 30 .................................... TTTTGATTCGCTTCGTATTGCTTGTAAAAT 129377 36 100.0 28 .................................... CTGATAAAGCCGAGATGATGATGAGACT 129441 36 100.0 30 .................................... CGCCTGTACCAGACCATATCCGAATACCTG 129507 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGGATGATTATCTATCCTACAGTGAATTTGTTAAGTGTTGCGAAAAAATGGAACTTCTTACTAATCATAGTAACTCACTATATATTGTTTCGTTTCCATCCAATGAGGGCTATATCCACGTCACTAAAGAGGTGTTAGAGGAAATCAATATTGTCTCAGATTATGTGGATCATTTTTATTCGTTAGAATTTATGTATGATCGCTTTACTAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCAGACATTCTTCATATGAGTTTATCAATAGAGGATCAAGTGGTATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGGAGCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGTGATGTAAGGATTTATAATATTTTTGAGGTACAGAAACCAAAATTGACGAATTTGAG # Right flank : GGACTCGCTAGAGAACAGGCAGAAAGCTATGTTTTTGTACTCTCAAGATTTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //