Array 1 9749-11830 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZD01000022.1 Candidatus Tokpelaia sp. strain RhiAcro1 isolate RhiAcro1_RAo1 NODE_14_length_39053_cov_125.795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 9749 35 77.8 31 ..........T.ATTG....-.A.A........... GTTTCTCAAACTGCTCCGATTATGCGGAAAT 9815 35 75.0 31 ........G...C.TG....-.A.....CA.....T CCCCCAGCAAGCACCCCACACATTTCCGCAC 9881 36 100.0 30 .................................... TAGGCACTAATTGCGACAAAGGCCGGTCAC 9947 36 100.0 30 .................................... TCGTGCCATTTGCACTATAGGCAGGGCGCT 10013 36 100.0 30 .................................... TATGATCGGGATAGGCAGTGCGTTCTACGC 10079 36 100.0 30 .................................... TACACGCGCACCGGAGAGTGCAAGGTATCT 10145 36 100.0 30 .................................... CCAGCCCTTTTTGCTGTTCGCGCAAATACG 10211 36 100.0 30 .................................... ATGAATGGGCAAACGATAAAGTTGCCGCTT 10277 36 100.0 30 .................................... CTGACGGCACAACAATGCCTCTGGACAGCA 10343 36 100.0 30 .................................... TTATGATGAAGAAAATCGGCCGGAAATTGA 10409 36 100.0 30 .................................... AAATACGGGTGGCAAGTGATGATGTGAGCG 10475 36 100.0 30 .................................... TTATGGTGAGGGTGATATGTATCGCCCTGT 10541 36 100.0 30 .................................... GCATTATGGCGCCGACATTATGCGGGTCTG 10607 36 100.0 30 .................................... CCCCTCGCTTTCATCAATTATCTGCACCCC 10673 36 100.0 30 .................................... GCTTGCGCCTGTGCCGGCAGAAGGCTGATG 10739 36 100.0 30 .................................... AGCGGCCGAAATTGAGCAGATGGATAATTG 10805 36 100.0 30 .................................... CATTGCCAAAGGCTTTAACCAGAACCGACA 10871 36 100.0 30 .................................... AATGGCTGCGGCCGGTGCCGGGGCGGTTTT 10937 36 100.0 30 .................................... ATTGCCGGGGGTTGGCACATCAGGCGTCAA 11003 36 100.0 30 .................................... CGGCAACGGCCTTGGCTGAAGTGGCGGAAG 11069 36 100.0 30 .................................... CGCCGACAATACGCCGGTAAGTCGCTTCCT 11135 36 100.0 30 .................................... AATAGCTTCAACGGCTTTAGCATCATTTGG 11201 36 100.0 30 .................................... ACGCCCAAACGCACGCATCTGCGCAGGCGT 11267 36 100.0 30 .................................... CGTCGTCCCGCACGCTAGCGATGCCATAGA 11333 36 100.0 30 .................................... AAATTGAAGATTTTGATGCTGTGATGTCTC 11399 36 100.0 30 .................................... AAAAACCATTTGGCTAGTAAGCAAATCCAG 11465 36 100.0 30 .................................... TGTAGCCAATATGCAATAGCAGCAGCTTTT 11531 36 100.0 30 .................................... GCTTGCCGAAGAATTGTTTCAGGCCAGGCA 11597 36 100.0 30 .................................... TGCTGGAAGAGTTCAAATGTATATCAATGA 11663 36 100.0 30 .................................... TTCAGTGATTATGACTGCCTGGTTTTTGAA 11729 36 100.0 30 .................................... GGTTAATGCTTTGATTGACGACTTTAGGAC 11795 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 98.5 30 GTAACAGCCCCCGCGCAAAAGCTGGGGGTCTGAAAC # Left flank : AGCGCTGCTGGCGGCGGCGGTTTGCGGCTCCTGCCTTGATACGATTTTATTTTTTTCTATCGCCTTTGCTCCGCTTTTCAGCTTTATTGACACTTTCGCTCATGCCGGCAATGGTTCAATAAGCGGGCAGACACAGCTTTTCGGTTTCGCTGCGCCGATATGGTTTTCTCTCGCTCTTGGTGATTTCTGGGTAAAGCTGGCTATGGCTTTTGCCATGCTGCTGCTCTACCGCGCGGCGCTGGCCTGGCTCATTCCCAGCCTTTACCGTTTGCATAAAGCCTCAAGCTAAAATCTTTTCCAGAACAGCTTTATTTTACTTCTGAGGGTTGGCAGGCTTCTGCTGCAAAAATACTGCCGGCGGGCGGACAGGCTGCACCTTTGCTGCTTTTACAATAAATAAGAACAGCAGATAATAATGCTGTGTGGTAAAAAGCGGCGCACCCGGCAATAGCGCGCAAAAACAGAATTTGAAACAGCTCGGCTTCATAGCGGTGCCAAAA # Right flank : CGCACTTCCCTTATTTATCTGAAAATAAACAAAAAAAGCACATAGCAAGCGCACAAAAATGATATTATCACCCGTCTTGCAAGAGCGAATAGAGCACTTTTTCGCGCGTTTGGCAAGCTTTATTTTAAAGAATCCTGCGCTTTTTCCAAGGCAAGAATAAGCTGCCGCAAGCGAAAGCGCAAGGCTTTACGCGGCTCTATTTTGCCGTTCTGCCGTGCTGTTCGCTGTTTTTCCAGCCTTTCGCCTGAGATTTTCTGTTTATTAGAGAGGCGCCGCAATTTTATGGTGCCCGGCGGTTCTGTTGCTGTTTTTTCTATATGCGTTATTGAGCAATTCTCTGCTTCCAGAACGGCTTTAACAGCATTGTAAAAATGCGCCGGGCGCGGAAATGAGGAATTGGCAATTAAAGGATTTTGCGGTGTCAAAATTTGCATAATTTGGGTAAAAATTTCCTGCTCAGAAAACGTTTTTTTTGTTTCTTCGTTCTCTGTCAGCCAAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAGCCCCCGCGCAAAAGCTGGGGGTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.90,-13.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 22321-26678 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZD01000027.1 Candidatus Tokpelaia sp. strain RhiAcro1 isolate RhiAcro1_RAo1 NODE_4_length_138021_cov_116.271_ID_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================== ================== 22321 36 100.0 30 .................................... TGTTTATTTCCCTCATATATCTGCCCTTGC 22387 36 100.0 30 .................................... TATGCAACCCCATTATAAAGCATCTGCTTT 22453 36 100.0 30 .................................... TATTGGTCGGCCGAAGAATTCGTTTCAATA 22519 36 100.0 30 .................................... TGATGTCGTGCCGGTAGTGAGTAATAAAAG 22585 36 100.0 30 .................................... AAAGCCCGCTCTCATCAAACACATGCCGCC 22651 36 100.0 30 .................................... TGATTTATCGCTGTATTTTCCTTCTGCCGA 22717 36 100.0 30 .................................... AAGAGTAGTCCTCAAATTCGCCGTCAGCGA 22783 36 100.0 30 .................................... ACCTGCTGGCTTAGCCAGTGAAGCATTGGG 22849 36 100.0 30 .................................... TTCGCATGAAGTATTGCAGGATACGGTCGG 22915 36 100.0 30 .................................... ACAAAAATAACGGTTGACAGCCGGACGATT 22981 36 100.0 30 .................................... AGATGCCAAATGGGATTGCGATGCTATTGC 23047 36 100.0 30 .................................... CCAAATTTCCTCCAACCAATCTTTTGCAGC 23113 36 100.0 30 .................................... AAAAAAATGGCGGCGCCGCTTTTGCACCGG 23179 36 100.0 30 .................................... CACAGGCAGCTACACCAGGTAGCTATATTA 23245 36 100.0 30 .................................... AATATTTAACTCCCCCAATGCTTCACTGGC 23311 36 100.0 30 .................................... CGCCAGACCGCGCGCCCCGTCCACCGCGCG 23377 36 100.0 30 .................................... AGATACATACTCTATTGCTTTTGGCCGATA 23443 36 100.0 30 .................................... TAATCATAAGAAATGTCAATTTCCGAAAAT 23509 36 100.0 30 .................................... GTGAGACTAAAACCCCCCTTATCTTCCCGG 23575 36 100.0 30 .................................... TCCTGCACCGTATTATTTCCACTATCCCGA 23641 36 100.0 30 .................................... TAATAGCCGTTATCGCCAAAAATCAAATCA 23707 36 100.0 30 .................................... TCGTCCACCGGCCGACAGCATCTTTATAGG 23773 36 100.0 30 .................................... TCACATTTCTGTGAAATATACGCCTTACCA 23839 36 100.0 30 .................................... TCTTCTTGGGTTGACTTGCCTTCAGGTCGT 23905 36 100.0 30 .................................... ATTAAAGCCGAAGCTAACGATATGCCTTGT 23971 36 100.0 30 .................................... ACAAACATTACACCGCCGCCTTGCTTGCCA 24037 36 100.0 30 .................................... AGAGATGAGGCAGTTAAACTTTTATTTCAC 24103 36 100.0 30 .................................... AGTAGTAAACGATTGACCGCTTACACCATC 24169 36 100.0 30 .................................... CTAATGACCGAAATTGTGGGTGTGGATAGC 24235 36 100.0 30 .................................... TAAATATGTCGTATGTGGCTATATAACTGG 24301 36 100.0 30 .................................... AATTCGGCACATAACCAGTAATATCCATGC 24367 36 100.0 30 .................................... ATGAAATGGCCTATAAGGATGGTGTTAGGA 24433 36 100.0 30 .................................... CGGTCTGCCAATGGGCAATTATTATCCAAT 24499 36 100.0 30 .................................... TGGCATGCTGTCATTGATTGCGCGTCCTGT 24565 36 100.0 30 .................................... TGTAGTATCAAAGGGCTTGATTTGCCGTTT 24631 36 100.0 30 .................................... TGCCCCCAGCGTTTTGGCCAAGGCAACAAA 24697 36 100.0 30 .................................... CCTCCCGCATCGACAGAGTTTTTTCCAAAA 24763 36 100.0 30 .................................... CCTTCAAAGACTGTGTCGCTTTCATAAAAG 24829 36 100.0 30 .................................... TCCTGAACTTGAAGATTTTGACAGTCGTGA 24895 36 100.0 30 .................................... GCCCCGGTGCCTGTTTTGGGGGCACCAAAA 24961 36 100.0 30 .................................... GGTAGGGACTTGACTATCCTTGAGTGCTGA 25027 36 100.0 30 .................................... CCTGTCTGGGCTCTGCACGATTGAGGAAGG 25093 36 100.0 30 .................................... TAGGCCAAGCCGCTCATTAGCGGCGGCAGC 25159 36 100.0 30 .................................... GTTGTGTCCGCTATTGTGTCTGTATTATCG 25225 36 100.0 30 .................................... GCAGTATCACTTACGATAATTCCTTTATCT 25291 36 100.0 30 .................................... CACTTTTGACGCTGGCAGGCTGCCATATTC 25357 36 100.0 30 .................................... GTGGTGACAGGAGAGATAGGATATGGAAAC 25423 36 100.0 30 .................................... GTATGGGGGCGTGGGCGCATAGCACAGAGC 25489 36 100.0 30 .................................... CTAATAAAGTTAAGCAACAGCTTGGCATTG 25555 36 100.0 30 .................................... CTCTCCCTATCAAGGAGAGTATCTCCTCCG 25621 36 100.0 30 .................................... AACCCCGAAGCCATGCAGACAATGGGAGAA 25687 36 100.0 30 .................................... AGACAAAGGCACAGGCGCTTATTCACTCTA 25753 36 100.0 30 .................................... GGCACAGCGGCCGCGTCCTGCATAAGCTCA 25819 36 100.0 30 .................................... GCCGCCAGCGCCGGATAAGCCGTCCGCCTG 25885 36 100.0 30 .................................... GCGCCAATGATTATAGAGAGGCGACAGAGC 25951 36 100.0 30 .................................... TCCTCGTCCATATCTCGCTTTTCGTCCAAT 26017 36 100.0 30 .................................... AGAAAAGCACTGGAAAAGCACTGGAAAAGG 26083 36 100.0 30 .................................... CGGAAGCAATCACTGTTTTTTTAGGCGGAG 26149 36 100.0 30 .................................... CAATGAATACATGCTTAGGTACGCATATGC 26215 36 100.0 30 .................................... TGTGGCGGCTGCATTAACTGCCGCCTCCGG 26281 36 100.0 30 .................................... TAATGAGCCAGTCTTACCAGTCTTATCGCC 26347 36 100.0 30 .................................... TTCCGGCCAGCATCACGGAAGTGCCAGATG 26413 36 100.0 126 .................................... TCCAGAGTCGCGCTTGGAATTCATAAGCGAAATATAGCTAATCAGAAACCGAAGGGGCGCGCGGAGCGTGCGAAAGGTGGTCAGACCGCAACCAACCACCCCGCCAGGCAATTATTGCTGCATCGC 26575 35 77.8 31 ..C.....C.G...A.........C..CA..-.... CACCAGGAGACGGAATCTATCATGGGGGGAA T [26609] 26642 36 77.8 0 .AC.....C.G...A............G.....GC. | C [26668] ========== ====== ====== ====== ==================================== ============================================================================================================================== ================== 65 36 99.3 32 AGTATAGCTAATCAGAAAATGCGGTCAAGCCGCAAC # Left flank : AGCATAATGACAGAGACGGAGCCTTTGCCCTGCCGGCAACCGGCACAATAATGGAATAGAAAATGACAGCCTATCTTAAACGCGCAAACTCAGAACCCAGACATTTAAGCGGATATAGAATTATGTGGATATTAGTCACTTTTGACCTTCCGGTAGAAACGAAAAAGCAACGCCATAATGCAACAAAATTCCGGCAGAAACTGCTTGATATTGGCTTTGAAATGAGTCAGCTTTCTAATTATATGCGATTCTGCAATGGCAAAGAGCAGTTTGAGTCTTATATCAAAAAGATTGAGGCATTTTTGCCGGAAAAGGGCCGTGTCTATGTTTTTCAGTTTACCGACCGACAATATGAAAACATTATCCGCTTTTCCGATCAATCACGCCAGGCAGCACAGAGAAACCCGAATCAGTTGGCGCTATTTTAGCTTTTCTCCGCTTTTTTATGAAAAAAGACCCCGGGTAAATTATTGCAAAAACAACAACTTACCCGGGGCCAA # Right flank : CTATGTTTTTCGTTTATTTTTATTGCCTCTCTCATCGCGCTGGAAATAGGCGGCTAAAGCCAATAAAAGCAGAGCGCCGATACCGTCAGCCCTCCAGCAGGGCTTTGCCTTCTTCTCCGTAGCCACGAATAATCAGAAATATCCCGCCGCCCAAAACAGCCAATATCAGAGCCAGGAAAAATATAACCCAGATTATATCACGGATAAAATTATATTTATGTACTTTCATTTGCCCGTTAATCATGCTGTCACGGGCGGCATTATCGGCGCGTTGCCCTTCTTCCGCCATGGCTGGCAGACGCTCTGGAGAATCCGGTATTATTTGCGCATAGCCGTGCAGCATTTCCGGCGGCGGCAAAGGCGAAAAAACCGGCTCATTTCAATTTTTTGCAGAGCCGTTACAATCTTTTTCTGCTTTTCTTTCGGCAGTGGAGAAATGATTTTCGACAATTCTTCCGGTATTTTATGGGCAGTCACACGCTCAGGCAGAGTTTTATCGC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTATAGCTAATCAGAAAATGCGGTCAAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 27293-37113 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZD01000033.1 Candidatus Tokpelaia sp. strain RhiAcro1 isolate RhiAcro1_RAo1 NODE_1_length_423276_cov_111.83_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27293 32 100.0 34 ................................ CTCCCCACTGCTTGCGTCAGCCAGATAATCATAC 27359 32 100.0 34 ................................ CTCTTGTATACTATCTAAATTTTCAAAGAGGAAA 27425 32 100.0 36 ................................ TTACAATTTAGAGGTGCTGGCTGCGCCGAATAATGG 27493 32 100.0 34 ................................ TCCTATGGATAGAAATCGTTTACATTTTGGGTGA 27559 32 100.0 34 ................................ TGGCACTCGGTGCCAATCAGCGAACGCTGCGGCG 27625 32 100.0 34 ................................ TTTTTAATGGGGGTAATATTGAGGAAGCTGATTT 27691 32 100.0 35 ................................ AGTTTATAAATATGATACTGACCCTTCTCAGGCTG 27758 32 100.0 34 ................................ AGCCAAAGACAAATTTTCTTGCAATGCGCTTAAA 27824 32 100.0 35 ................................ TATTATGAACGATTGCAAAAACTATGCAATCGCAG 27891 32 100.0 34 ................................ CATCGCTAGTTTCGCCGATTGACAGCAATCTTTT 27957 32 100.0 35 ................................ TTTGACTCATTATAATTACGCGCGCGCGCGCGCAT 28024 32 100.0 36 ................................ TAAATGATGATGGAGCAAAGGCTCTGATCATTAAAA 28092 32 100.0 36 ................................ CCATATTTCCAGCCTCCTATAACAGGGCAAGAATGC 28160 32 100.0 36 ................................ AATTAGCTGATATTTGCGCGTGCTATCTAAATCGTG 28228 32 100.0 36 ................................ ACCCAGTCCATATATTTAGCCACAGCGGGGGAAAGC 28296 32 100.0 35 ................................ TCAAATTCCGCGGCGCTGCGGTTGAAAATTAAAGC 28363 32 100.0 34 ................................ TGACGCGTATTGACGGCGCTTGCGGCCGCGATGC 28429 32 100.0 34 ................................ TTTCCAAATCCTGTATGCGCTGGATAACGGAAAA 28495 32 100.0 35 ................................ TTTATGAGGTGGGGGCATAGATGGTATAATAGACG 28562 32 100.0 34 ................................ ACCGCTTCTCGCCTCTGCCGCAATTTCGTTTACG 28628 32 100.0 34 ................................ CTCCAGTAATTCTGCTATTTTACGCTGAAGCGTG 28694 32 100.0 34 ................................ ATTATTTTTGAAGATAGAAGTGAATGAGGAGAGG 28760 32 100.0 35 ................................ AGGTGCGTTAACAGTATCGCCACGATAATGCGTTT 28827 32 100.0 36 ................................ AGTCCGTTTTGTTGACGCGGAAGGGAATGTCTATCG 28895 32 100.0 34 ................................ CGACATTTTTACGGATTACATTGACGATGTGGCC 28961 32 100.0 35 ................................ AGTCCGTTTTGTTGACGCGGAAGGGAATGTCTATC 29028 32 100.0 34 ................................ GTCGCTTATGCGTCTGCTTTAATGTTTAAGCAGT 29094 32 100.0 36 ................................ ATCAATATAGCTCATGCTGGCACAGCGCTCACTGAT 29162 32 100.0 34 ................................ CCCCCGAAAGCCAGCCTCCCGCAAAGCAGCGACA 29228 32 100.0 35 ................................ CGGCGTAATAATATTACCAGCAGCCGCAGTAATAC 29295 32 100.0 34 ................................ TTAGCCGTAAGGCTGATAAGCTTGAAGGGCGTGC 29361 32 100.0 35 ................................ GCTTAAAATAGCCCGCTCGTAATGGCCGTGCAGGA 29428 32 100.0 35 ................................ TCATGGAGCGCTGCTCCAACGGCATAATATTTTTG 29495 32 100.0 35 ................................ TATAATCTATCGGCAAATCCCATTCCTGCAACCCC 29562 32 100.0 34 ................................ CTCAGGTAATCATTGACCACTTTTTGAAAGTTGA 29628 32 100.0 35 ................................ AATTTATAAATATGATACTGACCCTTCTCAGGCTG 29695 32 100.0 34 ................................ CCTGCCAGCCAATCTGTGCCGTAATTATCCAGCG 29761 32 100.0 35 ................................ CAGAGACAGGACTTTGCCTATCTCTTCCCGGTCGC 29828 32 100.0 33 ................................ CCGCCGTAGTCTGGGTCGTGCTAAAGCGAGGGT 29893 32 100.0 35 ................................ AGCGCGGCGGTTAAAGCCGCATTACCCTGCACCGC 29960 32 100.0 34 ................................ CAATTACGCGCAGCATTGATGATAAATCTTTGCG 30026 32 100.0 34 ................................ CTACTGAGCGGGAGGAGGCCGCCGATGTCGTTGA 30092 32 100.0 36 ................................ GGCTGACCAATATGAGCTAATTGATGGCATGTTGAA 30160 32 100.0 35 ................................ TATGAAATGCCAACTGACGCGAATAATGTAGCGAT 30227 32 100.0 34 ................................ AAGGTAAATACATGATTATCAACGATAATCATGC 30293 32 100.0 34 ................................ ACCTGTATTAGCTGAATATTTGGGGGTTTTGCCC 30359 32 100.0 35 ................................ ATTACGGCATTTACTTCACCCTTAACTCCTGCCTC 30426 32 100.0 34 ................................ TTATTGCCGCTATTAACAGCTATAAGAAGTTTAC 30492 32 100.0 36 ................................ TGTAAAATTTCCGGCGATAAGCCTCCTAATTTCACA 30560 32 100.0 35 ................................ GCAGAATATCTTTGTTGATAATTCTGTTGAATTGG 30627 32 100.0 34 ................................ ACTGTCAATTTGTCGCCCCCGTGGTCTGGTCAAA 30693 32 100.0 36 ................................ ATATCGGAAAGCACCCTTTCCGCGGCTATAGTATAT 30761 32 100.0 36 ................................ AAAAAATTGAATTGAATTACGGTAATTTAGCCCTGC 30829 32 100.0 34 ................................ ATTTCACTCGAGCAACGCTACCAAATCCGCACAG 30895 32 100.0 34 ................................ GTTTATTTTATCCATACGCAACAAGCATACCGAT 30961 32 100.0 35 ................................ CACGCGTGAATCCAATATTCAGTGTCTGGCCGGTA 31028 32 100.0 35 ................................ AGGTAATCAAACCTTGCCTTGCAGCGGACGCCGTC 31095 32 100.0 33 ................................ TGCGCTTGCCAATAAGCGGAATCGCGGTGATTT 31160 32 100.0 34 ................................ AGTCTGGTTGTTTTTGATCCACCGCACCTTTTGC 31226 32 100.0 34 ................................ AAGAGAGGCATCGGGTCGGGCCGGTGCAGAAGAA 31292 32 100.0 34 ................................ CACATTGTCCAAAAGCAGGCCGCGCAATGCTGAA 31358 32 100.0 34 ................................ ACCGGAATGCCCGGAGCCGCATATGCGGGTAAAA 31424 32 100.0 34 ................................ CTGGATTTGGCGCTCCTCCGGCGGCAGCGCCGGT 31490 32 100.0 34 ................................ CAATAATCACGCAAACCAGCGGATTCTTCGTCTT 31556 32 100.0 35 ................................ CCGCCGTCATCAAATATTTGTCGCCGATTTTAAAA 31623 32 100.0 34 ................................ ATTGATATTGGGGGAGATATAAAAACCATACCGT 31689 32 100.0 35 ................................ CATCACTCTTCTCCATTTGTCTGAATAAAAAAAAT 31756 32 100.0 35 ................................ AGCTACAGGTACCGGAGACGAAAAATCTGCCACAA 31823 32 100.0 35 ................................ TTTTTTTGAGCATTTTTTAAGGTGTTTACCCTATT 31890 32 100.0 35 ................................ TGATTGCTCTCTGCCGGCGACAAACCGGCAGAGAG 31957 32 100.0 35 ................................ GGTGATATTAGTGATTTTGGCAACTTTGATGTTGT 32024 32 100.0 34 ................................ CTTAACAGCCGCAACAGGATTTGCAGCTATCCAT 32090 32 100.0 36 ................................ CTGCCATATAAGCAGGAGTCTTAAACATGTCTTTGG 32158 32 100.0 35 ................................ CTTGTATGTTTTCCCATTTCCCTCACTGTCGCCCC 32225 32 100.0 36 ................................ CGCCAATTATAGCTTTCCAGCGTGTATCCCAGCTTG 32293 32 100.0 36 ................................ TGCTAACGGCGTTGAGCGCACTGTCGGGTTGAAACT 32361 32 100.0 33 ................................ CGCGTGAAACCCCCAGTAATATAATTTTTGTAT 32426 32 100.0 34 ................................ ATTGTAAATAAGATTGTAAGCACGATACGGGAAA 32492 32 100.0 35 ................................ TGAGACCTGCTTATTTGGATATGAATAACTCACGC 32559 32 100.0 34 ................................ ATCATAAGCGTCAAGGGCAAATTGACGCCATTCT 32625 32 100.0 34 ................................ AACTTTCCATGGCCGCTGCTTATCGCGCGGCAGT 32691 32 100.0 34 ................................ TCCTCACCCAAAAAATGTGTCAGATTGACCGAGC 32757 32 100.0 35 ................................ CTCTATTAAGGAACCTATCAGACGGAAATAGTTCC 32824 32 100.0 34 ................................ AAATAGTCTCCAGGGTAAAAATTGATGTAAGGAA 32890 32 100.0 34 ................................ TTTACGGTTAACAAGGCGATACCCCTCTCCATAA 32956 32 100.0 34 ................................ ATCGCTTTTTTGACCTTATCCCGTCATTAAATAA 33022 32 100.0 34 ................................ CTGGCCTTGCAGCGCTGCTTTTGTTTGCTCTGTC 33088 32 100.0 35 ................................ CGCTACTGGTGCTAGTGCCATAACCATCGCTAAGG 33155 32 100.0 34 ................................ TGCCGCATATGCAGGATTGGAGCGGCCGGCTTGA 33221 32 100.0 35 ................................ GTTTATTAGCAATATTAAATAAATCTTTTACAAGC 33288 32 100.0 35 ................................ CGCTATAAAGGAACCACAGACGGAAATAGTTCCGC 33355 32 100.0 36 ................................ TTTGATATGCCGGACGGTGGGGGAACCGGTTTGCCG 33423 32 100.0 34 ................................ AAGCGGTTGACCGCACCTATAGCCGCCTTATTTC 33489 32 100.0 35 ................................ CACACTCTCCCGGATAACTCAATGGGTATTTATAT 33556 32 100.0 34 ................................ ACGCGCGGGGGAGCTGACGCTTTGCTTGACCTGC 33622 32 100.0 34 ................................ TGACGAAAAGAAAAATCGCATTTACTGGTCTGCT 33688 32 100.0 34 ................................ AAATTACACAGCCTGCGGCGAAGCGGTGGAGCAT 33754 32 100.0 35 ................................ TCACGCGAAGGAAGGGCAAGCGGCGAGCACTGTGC 33821 32 100.0 34 ................................ TTTTTTAGATACATATATAACCCATCAGGAACGT 33887 32 100.0 36 ................................ AATAATTTTGTTCATATCATCGAAAAGATACGGAGC 33955 32 100.0 34 ................................ ATTGTCATATCGCGGGTATTATCCAACTGATTCT 34021 32 100.0 34 ................................ CATCTCTTCCTTTATTTCGTTAAATAATTCTTTT 34087 32 100.0 34 ................................ AAGGAATCGCCCGCAATTTTATGGCAAATTTATC 34153 32 100.0 35 ................................ TCGCTATCTGGAAAACGGGGCGGGATTGACGACAC 34220 32 100.0 36 ................................ AATGAGGTATTTCCCTTTGTCTCCCTGCCGCACAAT 34288 32 100.0 34 ................................ AAGGCTATTTGAGCAGGTTTTTAAATCTATTATT 34354 32 100.0 35 ................................ TGGTGCCGATAGACCCCAATTCCGCGCTGCCTGAT 34421 32 100.0 36 ................................ TGACTGCTGAAAGGGGAAGAAAGCGGGTTGAACATA 34489 32 100.0 34 ................................ GCTACTTTAGCATCGTAAATCTCGATCAATTTAC 34555 32 100.0 35 ................................ GGTGCGGCCCCTGAAACAGCCGCTTCATAGGCGGC 34622 32 100.0 34 ................................ TGGTGCCGTGATTATAGGCAAAAGAGGTCAAAGC 34688 32 100.0 35 ................................ TGGTGTTGAGCGCACGCTCTGCGGCTGGAGCGTAT 34755 32 100.0 30 ................................ CCCGCCCGGCCATCCCAGCTTTACCCAAAA 34817 32 100.0 36 ................................ TGCGTTGTCGCTGCCGCAAGAAAGCATCGTCCCATC 34885 32 100.0 34 ................................ TTTCTCTATCCAATACAACTCTAAATTGCGGGCT 34951 32 100.0 35 ................................ CTATGGGGTGTCTGTGTGGCACCCCCCGGTGTCTG 35018 32 100.0 34 ................................ CTGGACTTGCAGCGCTGCTTTTGTTTGCTCTGTC 35084 32 100.0 34 ................................ CCGGCCGGCTGCCTACACACTCCCCCCTGCGGCA 35150 32 100.0 32 ................................ CGGCCCGGCAAAAGCGGCCGGAAAAGTGGTTA 35214 32 100.0 35 ................................ TGCTGCAATACCGGCGCATTGAAGAGGCGCTGGAG 35281 32 100.0 34 ................................ CGAGGTGGTGCAATTTGCCAACCTCATGGCGCGC 35347 32 100.0 35 ................................ TAGTGAAGCCCCCGGTCATATAATTTTTATATCCT 35414 32 100.0 34 ................................ TGACCAACATAATCGCCAACGCTAAAATCATAAT 35480 32 100.0 35 ................................ AGCCGATTGTCGAGCGGTATGGGCGCACCACGCTC 35547 32 100.0 35 ................................ CGCAAACCCTGATTAACGAACTTATCAATCAAGTC 35614 32 100.0 34 ................................ GTTAATAGCGCGCAACTGGTCTCTTTTGGTGGGG 35680 32 100.0 35 ................................ AAGCCTGTTTATCAGGAGATTGAATTTGAGGCCGA 35747 32 100.0 35 ................................ TGGAGAGAATACGGCAAGGAAGAGAAAGAGATGTC 35814 32 100.0 35 ................................ AGAGGCAGCTATAGATGATAAATAAAACTTGACGG 35881 32 100.0 36 ................................ TGATATTTCCCTTCCCCTGCATCAAGAGAGTGGCAA 35949 32 100.0 35 ................................ AATTAGCGTTTCCGTAGAAAGGCAGATAGCATGAC 36016 32 100.0 34 ................................ GAGGGAGGGGATTTAAATACCCCTAAAGAGGGGT 36082 32 100.0 35 ................................ CATTTGTTCCGGCATGGTCTGGCCATTCCTTGTAT 36149 32 100.0 33 ................................ GCAAGCCATGGTATTTATCCTTATAATGGAAAT 36214 32 100.0 34 ................................ CCCTTAATCGTCTCAATAACATTAACCATTTTAT 36280 32 100.0 36 ................................ AAACTCTTTAAACAGGGAGAATTGCTATGAAGCAAG 36348 32 100.0 35 ................................ TTAAATCAAGTATATCTTCTGTTTTATTTTTTTTA 36415 32 100.0 36 ................................ ATAATATCAGTCTGAACCTCTGACTGCTCTACCTGC 36483 32 100.0 35 ................................ TTTGGTAATAAGAGCCAGCAAGCTCAAAATCGTGA 36550 32 100.0 35 ................................ GTCTTTTATTGTTGAAAATCCGCCTATTGCTCGTG 36617 32 100.0 34 ................................ TAACCGTGAGCAGCCTGCTGCTCACCCTCAAGAG 36683 32 100.0 35 ................................ TTAAAGCGCTTGATAACATCAATCGGTTGCAAAAT 36750 32 100.0 36 ................................ AATCAAATCTTTGATGGATAATATATTTGCCAGCTC 36818 32 100.0 35 ................................ CTCCACATAGCAAACACCGCTAGACTGCTCTACTA 36885 32 100.0 34 ................................ AGACCGGCGCGTTTGCATGAAGTGGCTGGCCTTG 36951 32 100.0 34 ................................ TACTTTTTGTGGAGGCAGGAATACGCCAATTTGA 37017 32 100.0 33 ................................ TCGGCTAGCCGCAAAGTGTCGTCGCTAGCGCCT 37082 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 148 32 100.0 35 GTCGCTCCCTTCACGGGAGCGTGGATAGAAAC # Left flank : TGAAGGATCGCTTAGAGCGCATTATTGATATGTCTTGTGATAGTTTGCGCTATTATCACTTGGGTGCAAATTGGCAAAGACGGGTGGAACATATCGGGGCAAAACCGGCAATGGATCTCAATGCTCCCATAATTTTTTGATTTTCAAAGTTTTCTAATTATAATGCTGCGCTATGTTGTGTTGCGGAGAGGGCATTGTGCCGTGCTGCACGAAATTGCGTCTAAGTTATTATATAGTTAATAGATGATTCTGAGCGCGAATTTTGTAGCGCATAGTCGTGTCTATAATATAATGCAGCTTCTGCAGACGAGATAAACGCAGCGAGCGCGAACCTGGAGCCTGACTCATTTTCCAGGCAGGTTCGCACCTCATTACTCCATTGATTTTTATATGTTATTTTTTTTGGGTATCTTTCTTTGGCCGTATTTCCTCACTTTTTTGCACAGACTCGCGCTACGAAAAGCATTTTCTTTTATATTTTAATATGTTAGCGTGACGGC # Right flank : CACGGTCAATCTCCACCAACAGAAATATAGCGGCTTTTTGTGATAAAAAGCGCTGGGAAAAGCTGAGGAGAAGCCGCATTTATGACCGTTTGCGGGTGGAATCAAACAGCGCCGGCGCGCCGTGGCAAAGCAGATTGTATTTTCTCTTGCATTTAATGCCGGTAGAAGAGGCCGGCAGCTTGCGCCAGCAATTAAAAAAATGGGAAATTGTGACCGATAAAAGCCACGGCGAACAGGGTAGAGGCGGGGATATTCTAACCAGGCTGCTTGCCGTGTTTGACCTCTATATTGCTATGCACGATGCCCAGTTTGCCGGCGCGGAGCTGGCTTCTCTGGAGTTAGATAAAAAAACGGCGCAAGCGCTTTTTGTCAACCCGGGGGATTTCCGGCAGATTTTCCCGGAGAAAAAGGACGGCGTGGAAGATGAGCATTTGCCGATTCGCGGACTACGGGAAATGCAGCGCTTCGGCACCAGCCTTTTGCATAATTTCTATGAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 38557-38988 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLZD01000033.1 Candidatus Tokpelaia sp. strain RhiAcro1 isolate RhiAcro1_RAo1 NODE_1_length_423276_cov_111.83_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38557 36 100.0 30 .................................... GTAATGCCCTGCCCGGCAATACCGCTGCCG 38623 36 100.0 30 .................................... TGAAGTTAATTGCTGTGTTTCATTAGCATT 38689 36 100.0 30 .................................... GGACAGGCACCTATATAAACAAGGTGCCAA 38755 36 100.0 30 .................................... AAATTTTGTCAGTTCTTCTACCACGCCGCA 38821 36 100.0 30 .................................... TCAAAAACATTGGCTTCTGTTCAGACTACT 38887 36 100.0 30 .................................... GATACAATGGCTTCGGCCGGATTAAAGACG 38953 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GCTAAAGATGACCTCCAAATAAGGGAGGACTACACC # Left flank : GTTGCAGATCTTTTGAATCAGAAAGAAACAAAAGAGATAAGAAACGGCTTTGATCATTTTGATACGCTGAAAGTAAAATATTTTCCTGTCAATCTTACCGCAGAGATTGATAAAGCGCGCCGGTTAATGGCTTATGATCGTAAATTAAAAAATGCGGTGACAAAATCTGTAATTGATTTATTAAAAAGAGAAACCATAGAATTAAAGTGGTCTATGGGCGCTGATCATAAGCTGGAAAAGGTTTCTTTTATCTCTTCTGCAAAAGCCTTTCATTTAGATAAAGAATCCGGTAATAATAAAATTGTAGAAGAGCTATGTGATTCCCATTTTATAGCTATGGCTAAGTCTTTATTTACAGGAGAGTGATTGGAAGATAAAATATACAAAGAATCTATATTAAAAAAATGGATAAGAGACTGGGGGCATAACGGGAACAATGAACGAATTTTTCTTTTCAGAAAAACAAAAATTGTTGACAGGAAAAGAAGTTAGTGCAATAC # Right flank : CGACACTATCATTCTAGACGCATTCGCTGACCCGAACGCGGCATCACCAGAAGCGGCAGTAGCCAACGCGGTCGAGCGCGCTACACATCAAACAATGGAGGACTATTATGCAGAAATCAAAAACGCTTACGGGGGCGAAGCTAGAGGCGCGGAAAGCGGTGCGGAAGATAAAGGAGTTCAAACTCCCGCCAAAAGACTACAAGGATTTGGCGCATCTATACTTTCTGATGACGCAGGCGCTACTGGGCGGGCAGACAGTGCCGCCGGAGCTAGTCAAGCGCATCCCGACCCGGGACTGGCTAATGATACTAACGACAGTCGAGAATCTCAAGCACAAGTACGGCTGGACAGGGCAAGGGACGCTGCCACGAGACCGCAATCTGGGCAGACTATTAACCAACGCGCAGACGCAGACCTCGCAGCCAGCGCAGGTAGCCCCGATGGTGCCGGCACAGGCCGCCCCAGTGCCTCCGGTGCTACAGCAAGCGGACAGGGCGGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAAAGATGACCTCCAAATAAGGGAGGACTACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //