Array 1 72349-73173 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAO01000010.1 Lactobacillus crispatus strain NCK973 NODE_10_length_75877_cov_105.161061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72349 29 100.0 32 ............................. TAGAGAAGTTTGGACTTTAAACGACTTAAATT 72410 29 100.0 32 ............................. TGTGCTACCTTTTCCCATGACAAAATAAGTCG 72471 29 100.0 33 ............................. CGTGGCAAAATGATAGCCATGCAGGTACATATG 72533 29 100.0 32 ............................. AAACCGTTATGATGTTAGGTTTTGCCTGAAAC 72594 29 96.6 33 G............................ CTTCGTTATGCCAACCGCTTTTTTTGCTGGGCT 72656 29 100.0 32 ............................. GCTGGCAAACAGACGACTTAGCAGGGCGTTTG 72717 29 100.0 32 ............................. ATTTCATAAATAGTCATAGCCTAATCCTCCTT 72778 29 100.0 32 ............................. GAAGCCACAAGTGCAGATGTATGAGATGGATT 72839 29 100.0 32 ............................. CAGAGATTGGGCATTCTGGCTTAGAGATATCC 72900 29 100.0 32 ............................. TAAGCAAGAAACAGGCTTCATGCCGCAAGATT 72961 29 100.0 32 ............................. CCCCTTGCGTTACCTAAGTAGTAGCGACCGGC 73022 29 100.0 32 ............................. ATATGGAGGACATATCAACTCCTTAAAATTTT 73083 29 100.0 33 ............................. GTCACCCATGCGGGCTTCACCTTTGGAGATGTG 73145 29 93.1 0 G................T........... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 AGGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTCTTGAATATAAGGCATTTGTTCGAGCAACTCTTCTGGAGTTTTCGCACGTCCACCTTTGTATTCGCCGTACATTTTTGTTCTAAAAGTGACTTTTCCTGCATCAAAAGCTACCAATACGTGGGTCGGATCAACGTCTTTTAAAAGGACATCGAGCATGTTCTTAAAAGCGTAAATGGCATTGGTATGCAGGCCGTCTGGACTCTTGAAAGATTCTAGTTGACGATAAAGAGCGTAAAAGGCTCTGAAAGCTACAGAGTTACCATCGATTAGAAGTAATTTTTTATCTGCCATTTTATTCCCCTTTTATAAAAATTGTTCTCTATACTTACTTATCTATTTTACCAGTTTCAAGGGTAATCTTTTAATAGGAAGTTTAATGGAAAAGAAAAAAGCTCCGATTATAGGACTTTTGCTTGTGATTTTTCTTTCACTGCGTCAATTTAGCTCCACTTTTGTGAAGAAAATAAAGTTTCAAATCGTGTACCAAAGTTATTGTA # Right flank : CTTTATCGAGGTTAGGACATGCTCTCTATACAAAACTAGACAAACTCGCTTTTCTAGTGAGTTATGGAGTCTTGTTAAAAGCGCCCGACTTTAGTCGGGCGTAGGTTGACGGTGTTCAGTTTTTTATGAAATTGTAACGTTATCTTAAAAATTGGTCTAAAATAGTGTTATATTTATGACGATAAGTCATAAAATTACGAAACTGTCAAATCTTTTGTGTAAATAGATCTTTCTCATAGATCGATTTTTTATTCTTTATTTAGTCAAAGTAAGATTCTAAGGTGTCCTGAACCTGACCAAAGCCCGGTCCTAAACAGCCAACTTCAGTTCCTGAACCAAATAAACTAACATCGGAGCCCAACAAACCTAGTGTGAAAACTAATAATGACAATCACGGTAAATCAAAGAAAAATTCAGGTACTACAAAGCATTCAAGCAGAAACACGAATAATAATCCAAAGGCTAGAAGAAACGTAAAACGTCAATATAACTCAAATAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 5394-5605 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAO01000007.1 Lactobacillus crispatus strain NCK973 NODE_7_length_89594_cov_114.037939, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5394 28 100.0 33 ............................ AAGGTAAGCAACAATGATTTTGGACGTGATTTA 5455 28 100.0 33 ............................ TGAACCAGATCAGTAGTAGCAGGTGTTCCGTTA 5516 28 100.0 34 ............................ GTCACCCATGCGGGCTTCACCTTTGGAGATGTGG 5578 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ================================== ================== 4 28 99.1 34 GGATCACCTCCACATACGTGGAGAAAAC # Left flank : TTGTAGTGTATTATTTGCCTGACTAAGCTCTGACATAATTTCTTTGAAGCATTCAGGCTTTAATTTAGCTTTTTGTTGTTCGAAGGCTGAAGCGGTCATTCTAGAATTCATGTCAGGAAAAGCATGAAAAATTTCCGAATTCAGGCTGCCAGCTCCCATGTTAAGAATTAACTTAATCAAATCAGTGGAATTGAGCTTACGACAGCGAGTAAAAGCTTGATCAGATACAGAGAAATCGTGAATGTTGTCAGCGATTTTATTGATAATACTATCCATCAGTTTTAAAATATTTGAGTGAAGGGATTTCATAAGAGGCACAGCTTTCTATGAAAGACCAGATAATATGACGAAAGTGAGCAGAAGGGTAAATAAACTCTGCTCACTTTTTATTTTAAAAAGAAAAAAGACCGAATCAAAATGATTCGATCTTTAAAAGCTGTCGATATAATGTCAATGTCTTAACTTAATGACATTGCAATTTAGGATTTGCTTTTTGTTAT # Right flank : CACTAAAAGAATCCCATCGTTAAGCCATTTAGATTTAATAAAAAGCTGAAATTTATTCAGTTTATATTTTATACAACAATAATTATACCAGTGCATCCCTTATCCTTCACTCCAATAAACAAATCCAAACTAAAAAAGTCCCAAACGGGACTTTCTTCACACATCTAATCTCTCAAAGCACGATTGCCAATATCATGGCGGTAGAAGCAATCTGGCAGATCAAGCTTACTCAAATAAGAATACACATTATCCTGCGCCTGGACTAAATTGTCAGCTTCCGAAATCACCATGAACAGGCGGCCGCCATCACCTATCAGATTATCCAAATCACCTTTGACGTTGGCGTAATCGATATAAGTATTGCTGCCATCAGGCAACTTGCCGATCTTGACGTTAGGTGCCGGATGCGTTGGATAACCTTGGCTGCAGACAACCACGCCCAAGATAGAATTATCATTTTCTTCAATCTCAGGCAATTTTTCATGATTTACTGCTGCGTC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 68922-69196 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAO01000006.1 Lactobacillus crispatus strain NCK973 NODE_6_length_95545_cov_67.166101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68922 29 96.6 32 .............G............... ATGCTGGTCGGATCGCTCGATTTATGCAAGGT 68983 29 100.0 31 ............................. ATGCAGGATATACCTAATAATTTAAAGACTG 69043 29 100.0 32 ............................. GCTATCAATTGGAGTAGGTGAGACTGTTACAG 69104 29 96.6 32 ............C................ TTACGTGACTGACTAAAAAACTGAATCCAGGC 69165 29 86.2 0 ...........AC..........A..G.. | C,A,A [69187,69189,69193] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGTATTCAAAACCGGATGCATAGAGGAATTACCATTTTGCATGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAATCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAG # Right flank : TGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCTTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCATAAATCAAAGTTCACTTCAAGTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71921-72500 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAO01000006.1 Lactobacillus crispatus strain NCK973 NODE_6_length_95545_cov_67.166101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71921 29 100.0 32 ............................. GTGCTGGGGATTGGCGGTAAGACTGTAGCCAA 71982 29 100.0 33 ............................. TTGAAGAATGTTAACGCACAATTGCAACAACAA 72044 29 100.0 32 ............................. ATATTTGCTATTAAGCTACTACGACAATATTG 72105 29 96.6 32 ............................C AAGCCGGCACACTTGACTATCGTATTACTTCA 72166 29 96.6 32 ............................C TACAATGATGAAATACATTCAGCAAGGAAAAA 72227 29 100.0 32 ............................. TAACAATTCTTATATTTCTTTATTATTTAAAA 72288 29 100.0 32 ............................. GAATATGGATCCTCGCTAGCTTCTGTGTCGTC 72349 29 96.6 32 ............................C ATGGACAGTGCTCTCGTTGGGGCAGTTGCTAC 72410 29 100.0 32 ............................. TTGGTGCAGTGAATGAGAAATATGGGAATGCT 72471 29 82.8 0 ...........AC....T......T.A.. | A [72492] ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGTAAGAAAGATTGGCAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTATAAACGCTGGTATGCCAGCATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAATTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGACTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTAAACATTGGGAAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 94518-94790 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAO01000006.1 Lactobacillus crispatus strain NCK973 NODE_6_length_95545_cov_67.166101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94518 29 96.6 32 .............G............... AATATCATCAAGCTGGCTAATTACTGATTGTT 94579 29 89.7 32 T............G..............C CATCACAAAACATAGTGAAGCAGTTACACCCA 94640 29 100.0 32 ............................. GTTTCCACATACCTTGCATTCAGCTGATTTAA 94701 29 100.0 32 ............................. ATCTCTAGTAGCTCCTACAAAAACATCAATAT 94762 29 89.7 0 .......................AT.G.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GACGATTATTAGTAATGGTTAGTTCATTTTTGCTTTCACCAATTAGTTCACAAACAGTAGAAGTAGACTTGCTTACATCAATTCCAAAAGTAACTTGCATAATAAAAACCTCCAAAACTTAGTAGTAAAACGTATTTACTTAAGAAATCAGATCTAATTTTCTAAACTCGACATCTAGTGTCCACATTCTTCGAAGAGACTATTGAAAACTTAAGTAAAACTGCCAGTTTATTATGCGACATCAAGTGTCTAAAGACCTCAGGGCATATCGTTTTACTACTACTTTAATTCTACAAAAGAATAAAAATAGTGAATCAATTATCCCGTCGGATAACTAATTCACTATTTAGCTTAGAATGTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAGGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : TATTCTCCACGTGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //