Array 1 7302-376 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNPY01000013.1 Xanthomonas oryzae pv. oryzae strain YN39 scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 7301 31 100.0 35 ............................... GTGAGATCGGCCGCGTGCTCGCCCAAGGTGAGCCG 7235 31 100.0 37 ............................... ACATTAGCATTTGACGATTCTACTGGCGATCTGGTCC 7167 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 7101 31 100.0 37 ............................... CGCCTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 7033 31 100.0 33 ............................... TCGCCAGATTCCCGACGAACACATTGCTTTGCA 6969 31 100.0 35 ............................... TCCTGGTTGGTGTGGTATAGAATAACAGGGCTGAC 6903 31 100.0 34 ............................... CTCTAGTGTTGTGCTGGGGTCAATTTTCGATGAG 6838 31 100.0 34 ............................... TCACGTTTTGGCATCCTTGTCAATAGACAACTCC 6773 31 100.0 33 ............................... TAAGGAGGCTTTTATGCCAGAAACAAAACGGCT 6709 31 100.0 35 ............................... GACACTTAACCGGGTGAGAGATCTCCCAGACACTA 6643 31 100.0 35 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGTC 6577 31 100.0 35 ............................... CGCCTTTGCCATCTAATGCACATGATGGCCTAGCT 6511 31 100.0 34 ............................... CAGCGCAACATGGTCACGGTCTTGGCCGAAGAGC 6446 31 100.0 34 ............................... TCATGGCCTGACGTCCTTGTCAAGCAATTTTGAA 6381 31 100.0 35 ............................... CCAAGCTATTGCCAGCTTATTGTTGATGGGTACAG 6315 31 100.0 35 ............................... ATTGTTCCGGCAACGCACCTCAACGCCATAGCGAT 6249 31 100.0 35 ............................... TTCGTGTGAGTGTGAAAAATGAAGCCCGTGAACTT 6183 31 100.0 36 ............................... TTGAGACCTGGCTATGACTCAGTTGCAATGCAGATC 6116 31 100.0 35 ............................... TCGGCATCCCGAAAAACAAGCTGCGACTTGAAGGG 6050 31 100.0 34 ............................... AGCACTTTTCCGCCATGCTTCGCGATGAGGTGGG 5985 31 100.0 35 ............................... AGCCGTGCTGGGATGTTCTTCCGGCGCCACGTGCT 5919 31 100.0 36 ............................... ATCGGCATGTCCACCAAACTGCAGGAGTGGTTGGAT 5852 31 100.0 34 ............................... TGAGAAAGCAGCTGCCAAGGACAGCGAGGCGATT 5787 31 100.0 35 ............................... TCCTGAACCTGATCCGGCCGTTGCCGACGAAGCGC 5721 31 100.0 36 ............................... CTGAAGATTGCAGATTATCCAGCAGAGGTGCACGAG 5654 31 100.0 34 ............................... CACGGTCCCCTTGCTCGCGCCGACGCCGCAGCGC 5589 31 100.0 35 ............................... TGTTTTGCTGCTGCACGTGCATCTAAGGCTTCTTC 5523 31 100.0 35 ............................... CTCTGGCTCAACAACGAAGGCGACACCAAGAACAT 5457 31 100.0 34 ............................... TCCCCCTATGCATCTCAATTATCCTCAGCAGGAT 5392 31 100.0 35 ............................... TGGTGCAGGTACAAGGAGGGCAGAACCCACTGACT 5326 31 100.0 35 ............................... CGCCGTCAATGATTGGTCACAGCAGTGCTGGTACA 5260 31 100.0 34 ............................... CAGCGAGATGAGGCTGAGGCACGGGCACGTGTGG 5195 31 100.0 33 ............................... AGTACCAGAGTACCGCAAACAGATTAACAAGAC 5131 31 100.0 33 ............................... ACTGTAAAGGCCCTAATCCAGGGGCAGGCCAAT 5067 31 100.0 33 ............................... CAGAGGGTAGGTGGTGTGCCTATTTATTGGCAG 5003 31 100.0 35 ............................... TCGAGCTGTGGATATGCAAACTCAATTTGACCAGT 4937 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4872 31 100.0 34 ............................... TGATCCTGGGCCTCTGCCTTAATGGCAGACAGCC 4807 31 100.0 35 ............................... AGCGCAACATGGTTACGGTGCTGGCTGAAGAGCGG 4741 31 100.0 33 ............................... ATTGATGCTTGCATTTACAACATAGGTTTCGCT 4677 31 100.0 33 ............................... ACAATCAATGACTGCCCACCAAAGTTGCCCCTG 4613 31 100.0 35 ............................... CATACTGCACCATTTGAGTCGCCCACGCCTGTATC 4547 31 100.0 34 ............................... TAAAGTAGGACTTCCCAAGGTTAAGAGACACACC 4482 31 100.0 35 ............................... ATGTTAAATCCAACCAGTACCCGGCAGTTATTGAG 4416 31 100.0 35 ............................... TTTTGTTCTGTGGATTTATGGGCGCGCTGTGTGGT 4350 31 100.0 34 ............................... TGGCCCTTGTGTTGCGGAGGATACGTTTTTCCTC 4285 31 100.0 35 ............................... TTCTTTGGGATTCCAAGGAATCTTGAGTTAGGCTT 4219 31 100.0 34 ............................... ATGTTCAGCCGGATCGAGTTCACGAAGATCAACT 4154 31 100.0 34 ............................... ACGACCACCTGGGCGGCCAGCTTGAGCGACCGCA 4089 31 100.0 37 ............................... CTCGCGGTACCACCCGCGCCAGTAAGGGTACTGATCC 4021 31 100.0 34 ............................... ATACGCCACTGAATTAGGCATCAGGTCTAACCGG 3956 31 100.0 34 ............................... ACGTTAACTACCGCACGCAGGTAGCCGACACCCC 3891 31 100.0 35 ............................... AAGTCCTTGGCCGAGCGTATCGCAAGGCACTGCAT 3825 31 100.0 35 ............................... ATAGCCGTAGTATGGGTTCACTTCGGCCACGGATA 3759 31 100.0 34 ............................... TGGCGAGACTGCCACCAACTCGCGACGGTATTGT 3694 31 100.0 34 ............................... ATGATCGTAGGTCCTATGTGGGTAGGTCGTGTAG 3629 31 100.0 36 ............................... CTCTAGCGTCTGTGAAGGATCGGGAACGCAAGGCCA 3562 31 100.0 35 ............................... CCGATCTGCGCGGTAGGAGCGCGCCGGTCTGGACC 3496 31 100.0 36 ............................... TTTAGCTTTCAAACCGCTCTGCGCCAGCAAGCGATT 3429 31 100.0 35 ............................... TCGTGCTCCGTCTCAACCAGATAAACCGCATAGTC 3363 31 100.0 33 ............................... ACTGCGCGAGTAAAGCGTTATCCGTAGGGGCGC 3299 31 100.0 35 ............................... AGCAGGATGTGCCGCCAGGCTGCCGGTGACATCTG 3233 31 100.0 35 ............................... TAGCTCGCTCATGTCGATGTCCTCGCGCGGTGTCG 3167 31 100.0 34 ............................... CCGCAAGCGCTCACCGCTGCGCTACACGCGACAC 3102 31 100.0 35 ............................... TGGGTGATGCGCGTGACCTTGTCGGCCGCGAGATC 3036 31 100.0 34 ............................... GATGTAGATGCGCGTGCACTGCGGGTAAGCGGCC 2971 31 100.0 34 ............................... CAGGTCAAAGCATCAAAGGCGGCGTTGTGCGCGA 2906 31 100.0 35 ............................... TTCTTCCTTGCGCGAGTACGGCTTACGAAATACGT 2840 31 100.0 34 ............................... TCGAATACCGAGCCCGAACTGGTGCGTGACGTGC 2775 31 100.0 35 ............................... AAACCAGACGCCCAGAAACGCAAGCGTGCGATTGT 2709 31 100.0 36 ............................... ATGACCTTAAGCTCCGTACTCGCGGTCCGCAGGATT 2642 31 100.0 34 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTA 2577 31 100.0 36 ............................... GCAGCTAGCCGCTTGGCGTTTTTTTCGTCCCGAATC 2510 31 100.0 35 ............................... CTGGGTCTGATGCTTACGATGCACGCGCGCCAGGA 2444 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 2378 31 100.0 35 ............................... GTGAATTCGGCGTCGTACCAGGCCTCGAGGGCATC 2312 31 100.0 35 ............................... GCGCACTTGTTCGATGTACTGCGCGCGGGATTCTT 2246 31 100.0 35 ............................... TTTGCCGGAGTACGGGCGAAACCCACGCCCGACGA 2180 31 100.0 34 ............................... GGCCGCCGAGATATCAACCCCGATGCCGCGCATG 2115 31 100.0 35 ............................... GCCGACACGAAAGCTCTGAAACGTTGCATTGCTAA 2049 31 100.0 35 ............................... ACCTACGACGGCTCGTCGACCTACGACGGCTTGCA 1983 31 100.0 35 ............................... ACATCGCATCGACACACGGGCGTCTCAACCGGCAG 1917 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 1851 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 1785 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 1720 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1653 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1587 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1522 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1455 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1389 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 1325 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 1260 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1194 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1128 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1063 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 997 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 931 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 865 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 801 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 734 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 669 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 603 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 538 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 471 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 406 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 106 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //