Array 1 66947-65087 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWB01000018.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5807 NODE_18_length_90920_cov_73.960482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66946 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 66885 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 66824 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 66763 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 66702 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 66641 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 66580 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 66519 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 66458 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 66397 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 66336 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 66275 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 66214 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 66153 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 66092 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 66031 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 65970 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 65909 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 65848 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 65787 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 65726 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 65665 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 65604 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 65543 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 65482 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 65421 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 65360 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 65299 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 65238 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 65177 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 65116 29 96.6 0 ............T................ | A [65089] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 85499-83519 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWB01000018.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5807 NODE_18_length_90920_cov_73.960482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85498 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 85437 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 85376 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 85315 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 85254 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 85193 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 85132 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 85071 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 85010 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 84949 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 84888 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 84827 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 84766 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 84705 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 84644 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 84583 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 84522 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 84461 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 84400 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 84339 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 84278 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 84217 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 84156 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 84095 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 84034 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 83973 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 83912 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 83851 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 83790 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 83729 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 83668 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 83607 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 83546 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //