Array 1 272009-271262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEM010000008.1 Pectobacterium versatile strain NAK:94 PCC:163 NAPHMDBH_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 272008 28 96.4 32 ...........T................ AATAGTTTGCATACCCAGCGGCTGGCCGTCGA 271948 28 96.4 32 ...........T................ TCGCTTTCGCCCGCACCAAACCATCCCTTGAT 271888 28 96.4 32 ...........T................ GTACATGCGCGTGGAGTTCCCTGAGACGGGCG 271828 28 96.4 32 ...........T................ TCACGCATGCGGGGAGGCTCCGCGCGTCTGGA 271768 28 100.0 32 ............................ ATCGGAACATCTGATAAATTCATCGAACGCCC 271708 28 100.0 32 ............................ AGACGCAGGAAACCGACGCGGTATTTATTACC 271648 28 100.0 32 ............................ ATCATGCGCACCAAATAAAAATAACTAACTTA 271588 28 100.0 32 ............................ AATAATTCCGGCACTCATCTTCGTCTCTCGAC 271528 28 100.0 32 ............................ ATCGCTACAACGAGATAGCACGCAACGCGAAT 271468 28 100.0 32 ............................ AGTCGGCCGTAAATGAAAGATGCGACCGAAAT 271408 28 100.0 32 ............................ AAACCCATGAAGATTTCGGACTTTCCGACCAA 271348 28 89.3 32 .G.........T...A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 271288 27 82.1 0 ...........T.C........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 96.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAACCATCCCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGACGTGGAAAAACGCAGCGCGCTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCTCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAATCCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : CTTATCGGGATGCGTCGCTGACGCGGCACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCAGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 280961-283029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEM010000008.1 Pectobacterium versatile strain NAK:94 PCC:163 NAPHMDBH_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 280961 28 100.0 32 ............................ CGCCAGGCAGCGCAGGAGATCGCCAGCCAGTC 281021 28 100.0 32 ............................ TGGCAAACACCGCTTTTTGATACTGCGCACAC 281081 28 100.0 32 ............................ TAGTGACTGATCCAGAATCAGACTCACAGTGA 281141 28 100.0 32 ............................ CTTTGTCCCCGCTGGTTAATTTAGATAGCCGG 281201 28 100.0 32 ............................ ACGGACGCTATCGGGTTCCTTGAGCCAGCCTA 281261 28 100.0 32 ............................ TGACTATCCATCAGACGTGGAGATAATCCCCG 281321 28 100.0 32 ............................ ACGATCCAACGAAGGCGAACGGTAAGGGACTA 281381 28 100.0 32 ............................ GGTAAAGCCTCCCGCCAGGCAGCGCAGGAGAT 281441 28 100.0 32 ............................ TTAACCCGCAATGCCTGCGCTCAGACAACGTT 281501 28 100.0 32 ............................ ACGCCCCCGCAACCCCGGTTCGTCCGGTGTTC 281561 28 100.0 32 ............................ AGCAGACTAGCGCCGGCGCTGTCTCCCGATGC 281621 28 100.0 32 ............................ TTTCGAAAATCCGTCATCGCAACTTTAACGTG 281681 28 100.0 32 ............................ CGTATTCGGTTAGTTGGCTGGCGCTGCTTCGC 281741 28 100.0 32 ............................ CGCTCAGGTGTGGTCCGCATACGAGCTATTTA 281801 28 100.0 32 ............................ AGAGAGCCAATATAAATCAGTGGCTCGTTGAT 281861 28 100.0 31 ............................ CCCAGTGATAACCCTCGTCTTTGTTGACGAA 281920 28 100.0 32 ............................ TGCGGGTAACAAATGAAATACCGGAGCGAGTT 281980 28 100.0 32 ............................ AATGGCAGCATTATCGACAGAGGTTAAAGCCT 282040 28 100.0 33 ............................ CGCGAGTTTCAGACCATTGAGGGAATGACTCTC 282101 28 100.0 32 ............................ AGTGCTCCAGCGACGAGCTGTACGAGTTGAAA 282161 28 100.0 32 ............................ TCAATAAAGGCGGCGCGGCTGGCTATATCGCT 282221 28 100.0 32 ............................ AGAACGAAGCGAAACGCTGGTAAGCATCTGTG 282281 28 100.0 32 ............................ GATGGTGGCGCATGGTAAACAGCATATCGTAT 282341 28 100.0 32 ............................ TTCGTATCCATGACGTGCATTACGGTAATCTG 282401 28 100.0 32 ............................ TTGGCGGCAAATTGCTCTGCTCTCTCGGCCAT 282461 28 100.0 32 ............................ ATTGCAAAGTTTTCGTGCAACATGGTCCTGAC 282521 28 100.0 32 ............................ AGTACAGGCGCTTGGAGAAACTTTACAGATTT 282581 28 100.0 32 ............................ ATACCGCAACGCCCAGCAGGATGAGCAACGCA 282641 28 100.0 32 ............................ ACATCAGATCAACCGGCTCGATACCACGCCAT 282701 28 92.9 32 ...........C.C.............. AGTCCGATCTTCATCACAGCTGACGCCTCTTG 282761 28 92.9 32 ...T.........C.............. AGAAGCTATCGCGGCGCGAAACGAAGCGCTTT 282821 28 96.4 32 ...........C................ TTGATATCACGCTTGAAGTAGCTGACTGGCTC 282881 28 100.0 32 ............................ TCTGACAAATCATTAGGTGATGTGAACTTTCG 282941 28 100.0 33 ............................ AATTGCTATTAGCTGGCGGATTGCTGGCATCAG 283002 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACAGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATTTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : ACGGCCTCAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACACGCACAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 149343-147484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEM010000012.1 Pectobacterium versatile strain NAK:94 PCC:163 NAPHMDBH_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149342 29 100.0 32 ............................. AACTGCGGATTTTGCAGGAAGAAACAGGCGTA 149281 29 100.0 32 ............................. CGCCCGCCAGCAGAACGCGGGTATTGATCGCT 149220 29 100.0 32 ............................. GGGTGGCATGCAGATCACGTCGAGGCTGCTTT 149159 29 100.0 32 ............................. CCGTGTTGGACGCGAAAGGCCAGAGGTTCAGC 149098 29 100.0 32 ............................. TGCTAATGCCGGTATCAGCGTCGCCAGTACCC 149037 29 100.0 32 ............................. ACGGTTTGCTCTAACCATTCTTGCATATCTAA 148976 29 100.0 32 ............................. TTGCGCTCTATACCGATGAAGGCGCAAAAATC 148915 29 100.0 32 ............................. CCCTTAACCCAGTATGGCCTCCCATACAAATA 148854 29 100.0 32 ............................. TGCGGTTTTCGACGGGCTTGTAACCCATAGAC 148793 29 100.0 32 ............................. CCAGTGGGTTTCCAGTGCTCTTCGCCCCACGG 148732 29 100.0 32 ............................. CTGGAGGACGTGACGGCTATTGAGCGCCTTGG 148671 29 100.0 32 ............................. ATATTGAAGGTGACGCGCTATATGGTGTTAAA 148610 29 100.0 32 ............................. TCCATGGCGGATCGGCGTATATCAAGCGGTAC 148549 29 100.0 32 ............................. CACTTACCGGAGGTAATCATGAAAATAGATAA 148488 29 100.0 32 ............................. CCGCGATTACTGGGAGAGCAAATTATCTGTAA 148427 29 100.0 32 ............................. GCGTAACCCATTCCTTCCATGTCAGATTGAAC 148366 29 100.0 32 ............................. TGGGATGACCTCAACGAACAGACAGCAGCCGA 148305 29 100.0 32 ............................. TATTCACGCGTTACCTGATTGATCTGATAAAC 148244 29 100.0 32 ............................. ACCATGAACCGCACTGGTCGCGCTAAGGGGTT 148183 29 100.0 32 ............................. CGATCGCGCAGCTGGTGGTCGACGAATGGCGC 148122 29 100.0 32 ............................. ACATGCTGATTTTACGAACCGGTATTTATGAC 148061 29 100.0 32 ............................. CTGATGCCGCATATCACACCATCATTCGATGA 148000 29 100.0 32 ............................. TTTTTGCTAGCAGGTTTAATCTCCGAACTGTA 147939 29 100.0 32 ............................. GGCAGTCTGGCATTCTTCTCTGGTTCATTGAA 147878 29 100.0 32 ............................. TGCGTTGCTTTTCTTGCCCATCAGTAACACTG 147817 29 96.6 32 .......A..................... GCTGATGCGGATAATGTTTCTCCGCGTGATTT 147756 29 96.6 32 .............C............... GACGGCCTCGGGTCGGGCGTTCATCTGCCATT 147695 29 96.6 32 .............C............... GCACAGAGCGTATCGCCTGTTTCACCTCTTCC 147634 29 93.1 32 ............TC............... TGGCACCTCACGGGATGCCTATGCATTTAAAA 147573 29 96.6 32 C............................ GCCATTACGCCTCCGAGGTTACTGTCGTTGTA 147512 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CATTCTCTGCTAATTATTTACTGTGTTACTTCAAGACGACGGATATGCATTGATTGCTTCCAATTTATGTCAATATGCTTGTAATCATTAGATATAGTGGATGAAAAACTTTGGTATTTACAAGATATATTGAAATTCGGTTGAGAAAGAATATTTTTAACAGAGAAGTTCTTTACCTAGAAATAGAATCATAGTGGTATAACTCTTGCAGAAGAAATGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTAGTGATGGTATGGGCGGCGAATGTGGAATTCGGTTTTGGGCTCCAAACCTAGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTATTGCATGTTGGTCTAAATATCCCCTACACGGGGTCAAATTCCGCTTCTGGTTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCGCCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGATGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCATAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTAGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152618-151551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEM010000012.1 Pectobacterium versatile strain NAK:94 PCC:163 NAPHMDBH_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152617 29 100.0 32 ............................. CCGACGTAGACACTATCGAAGAAATCGCTAAC 152556 29 100.0 32 ............................. GAAGAGGCGGGGACAACAAACGTTACGTTCTT 152495 29 100.0 32 ............................. CGATTGACGCACGCATGGCGAAGGCAGATGCA 152434 29 100.0 33 ............................. TTCGGTTAATCAGTACGCATAACGGCACCGAAA 152372 29 100.0 32 ............................. GTTATTCGCGCCTTCTCCAGTCGCGTGGCCGA 152311 29 100.0 32 ............................. AGGCCATGTTGGATTACGTGGCCGCTCAGAAA 152250 29 100.0 32 ............................. GCAAATCGTCTTTTTGTGCGATCCCCGCTGCC 152189 29 100.0 32 ............................. GAAATGAAAAAACCACAGCGAGACATGACACC 152128 29 100.0 32 ............................. GTTGCCGAGAAGGCGATCAGTACATTCCTGTC 152067 29 100.0 32 ............................. GGATCGATCCTTAAATTGCCGTACATGTTTAT 152006 29 100.0 32 ............................. ACTTTGTTATTCTCCGCCTTACTCAGTTTCTC 151945 29 100.0 32 ............................. GCCTTTCGGTTGTACCGGTGTACCAGCCCCAG 151884 29 100.0 32 ............................. TTCCTGCGTTGGTTCGTACGGGCGGCACTGAG 151823 29 100.0 32 ............................. CATTTATTGATGCAATGCGAATAAAGTCCGGC 151762 29 100.0 32 ............................. CGTTATAGGCAGGCTCAAGAAACCCGATAGCG 151701 29 100.0 32 ............................. CACAAAAACGCTGATGGAACCTACAACGGCGT 151640 29 89.7 32 ........T....T..............T AACAATGCCGGAACTGAAACCAGACCGCGCAA 151579 29 89.7 0 ............T............G.T. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCACCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : AATAGTAGAGGTGTAAATCATAACGGTTTCCATCTTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGTAAGGCATCAGGATACATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCCGCTAACAACCTGACGAGTATCGTACCGTTCCTCGGGGGTAGCACCTCGCGTAAGGATTATGAGGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 270-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGEM010000059.1 Pectobacterium versatile strain NAK:94 PCC:163 NAPHMDBH_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 269 29 96.6 32 ........A.................... CGATCGCTCAGCTGGTGGTCTACGAATGGCGC 208 29 96.6 32 ..........A.................. CCGCGCTTACTGGGAGAGCACCTTTTCTGGTA 147 29 100.0 35 ............................. CCGCGGATTTGGACGCGGCTCTGTAACGGGACGAC 83 29 100.0 34 ............................. CCCGCTCGGCTCTGCAGTTCTATTCGCTCGGGTC 20 20 69.0 0 ....................--------- | ========== ====== ====== ====== ============================= =================================== ================== 5 29 92.4 34 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : AAACCGACCATGAACCGCACTGGTCGCGATAAGGGGT # Right flank : G # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //