Array 1 272253-273134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATE01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 11.A.05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272253 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 272314 29 100.0 32 ............................. GCGACTGGCTGGTCAGCACGCCGTTAGTCGCC 272375 29 100.0 32 ............................. AAATTGTCTGATAGATTGGCAAAAGCGATGGA 272436 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 272497 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 272558 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 272619 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 272680 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 272741 29 100.0 32 ............................. GCATCCCGGACAACAGGATCATCCCATTTATT 272802 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 272863 29 100.0 32 ............................. GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 272924 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 272985 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 273046 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 273107 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289421-290916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATE01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 11.A.05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================ ================== 289421 29 100.0 32 ............................. GAGGCGCTGGCCGCGCTGGCCGCAGAAAAATT 289482 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 289543 29 100.0 32 ............................. CTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 289604 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 289665 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 289726 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 289787 29 100.0 76 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTAGTGTTCCCCGCGCCATGTGGTCTGTGCATAACGGTGTAACAGAG 289892 29 100.0 32 ............................. CTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 289953 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 290014 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 290075 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 290136 29 100.0 33 ............................. GTAGGGAAGATTGGGCGCTTTCAATATCTTCCA 290198 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCACGCGGTC 290259 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 290320 29 100.0 50 ............................. TTTTATAACGACACTAAAACCTATAACGACACTAAAACCCGCCAGTTATA 290399 29 100.0 32 ............................. ATTTTAACGGCAAGGTCGACAGGAAATACCAC 290460 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 290521 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTAGCGCCA 290582 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 290643 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 290704 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 290765 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 290826 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGAGCTGAAAA 290887 29 93.1 0 A...........T................ | A [290913] ========== ====== ====== ====== ============================= ============================================================================ ================== 24 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //