Array 1 446497-449937 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014644.1 Leptolyngbya boryana dg5 plasmid pLBX Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 446497 36 100.0 37 .................................... TCGAGAACGTAACGAGAAGCAACGGACATAGAGCCAG 446570 36 100.0 38 .................................... CTACGATCCGGCTGACTACTAACCCCAACGCGCAGCAA 446644 36 100.0 41 .................................... TTCTCAGTTTACGATTGTGGCGTGATTGTGGCGTGATCGGG 446721 36 100.0 48 .................................... CTGAACCATTTGTAACTTACTCAGCTACTTTTTAATTCTTATTTTAAG 446805 36 100.0 37 .................................... CTCTTCCCTGTCTTCCGTTCCGCTGCAACGTCTCGAT 446878 36 100.0 44 .................................... TCACCAGAGAATGCCATCTGCATTAGTGCACCCCCCATATTCTA 446958 36 100.0 43 .................................... TGTAAAGCTCTTTCATAGCTTCAAATCCTTTACTGAAGGTCGG 447037 36 100.0 40 .................................... ATGAAGCGCTTAGTGCCTTTGCTTTGAAACTTCAAGAATG 447113 36 100.0 43 .................................... ATTTTACGCCCTTCAGAAAGAATCATTTTTGACTCAATAACTT 447192 36 100.0 43 .................................... CGCGGATGTTCCCCGTCTTTGAGGGCATTCCGGTGGTCATGGA 447271 36 100.0 42 .................................... GTTGGTTTGTAGCGATTTGGCAATTGATACATCGCTCTCGAT 447349 36 100.0 38 .................................... CTTGCCATAACTGACAGACAAGGTGTCAGGGGATTTGC 447423 36 100.0 40 .................................... GCTGTTTTTCTCGACCTGGAATTAGAAGCCTAGCTGGAAA 447499 36 100.0 40 .................................... CATCAACTGCGGTGTCAGATTCTAAACCATAACCATTGTT 447575 36 100.0 44 .................................... AGTTCTGTCTATGTTCGTGACCGTTGTTTCTAATCCGCTAGCAA 447655 36 100.0 52 .................................... TTGATGCATTCGTAGGTCGCAGTTCAGTAAGTGGTGATCACTTCGAGCGTGA 447743 36 100.0 40 .................................... TTGGGTAAAGGGAGCTGATCGGGCGTTTGAATCGACTGTA 447819 36 100.0 38 .................................... CCACCCACACGGGGGGACGGGCGCTCCACCTATATGTA 447893 36 100.0 45 .................................... GGAATGGATCAAAGTTGCCATTTGCATCCAAATAGATAGGATCAA 447974 36 100.0 42 .................................... ACGGTTAGCGTTCTGCTTACCAAAGATTTTCCAAATAGGCAT 448052 36 100.0 48 .................................... TTCAAACTGCTCGTCAAATACCTCATCCCCTGCATGTCCCATCTCTAG 448136 36 100.0 36 .................................... TCATTAATCAGCGAAAGACTTCTTACTTGCGGCGGT 448208 36 100.0 36 .................................... TCACTTGCAGCCGCTTTGATTTCGGCTAATTCCTGG 448280 36 100.0 37 .................................... TGAAGTTCAAAGCGAGTCCAACTTGTTCGAGTGTTTT 448353 36 100.0 36 .................................... ACAGTTCAGGCAACGAAGCTTGCGGCGAATTGCGAC 448425 36 100.0 34 .................................... ATCACAAGCTTGTATCCAATAGAAGGTGTACCCG 448495 36 100.0 45 .................................... TTTATGGGTTTTTATCGAATAGATTGGGTGATAAAGGCTTATCTG 448576 36 100.0 37 .................................... CAAATTTGTATCAGCAGCAATACTAATTAGTCTTTCA 448649 36 100.0 40 .................................... GCCAGCACAGCACACATGTCTTAGCCTCAAACGTGGGGAG 448725 36 100.0 35 .................................... TCCAAGAACAGAACGCAAAATCTAATTGTTTTAGT 448796 36 100.0 42 .................................... ATGAAAGATGTGCAGATTATGAGTGCCAAGATTGCATCACAA 448874 36 100.0 39 .................................... CCGCGCAAATTGCTCACTGGACACAAACGCAGAGCGAAT 448949 36 100.0 39 .................................... TACTTGTATTGCTCGAAGTTGATCTTCGGTGCCGTGAGT 449024 36 100.0 42 .................................... TAGATCTGAATCTAAGATCAAGAATCTGAATTAAGATCTGAG 449102 36 100.0 36 .................................... CTAAGAAGGTAGTAGTCAAACGCTCCACCATACGAG 449174 36 100.0 48 .................................... TCTAGAAGTACATTATTGTTAATTACTGGCATTTAATATCTACCTCCA 449258 36 100.0 40 .................................... TGAAATATTAAATAATGGATGCTCTGAAAGTAAAGCTACA 449334 36 100.0 39 .................................... CACGATCATTGCTATTACCAGAGCCAATAAAATTGATGC 449409 36 100.0 35 .................................... CTGTATCTTTTCTAGCTTGATCTAATTTCTTTGAT 449480 36 100.0 39 .................................... TAGATAAACAGGATTGTGTCTGCATCCTGTTCAATGTTG 449555 36 100.0 41 .................................... GAATCGAATTGATGTAATTCTGCCTTTCGATGGTCATAAGA 449632 36 100.0 234 .................................... TGAGCATTGAGAATTACTCTATAGATCAAATGAATGGTAGCGATACTGATTCTCAAAAACGTCTGAGCCAGCATTTTCATCTACCAGCCCATTCTCTAATCAAGCCCTTACAAGGCGTCCTTTCAGTCACAATCAGCCAAACCAGATCTAAGTAACATTGATGTAACAAATTTATCCAGTTTCCCGCATTGCCACTACAATACCTTTGGCGAAAGCGCAGTTAGAACGATCAGG 449902 36 69.4 0 ......C.C....C.AA..CC.C.....C.A...C. | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 43 36 99.3 45 GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Left flank : CTTGTTTCATCAGTTGAAAGGTTTAGAAGGACAAGAAAAAGTATTTGAGAACTGGCAGTCACCGAATGAGCCAAAATGGAAACAAGATCCTGAAGGTCATTGGAAGCTGAGGGTGTTGAAGTGTTTAAACTTCATCTGTGGAGAAAACTTTAGCTCTCTTGAAGAAGCCAGTTTACTTGTGAAGGTGCATCAGAAAATAGAAAGGGCGATCTCTCAACTATAATGTTGTTCCGTTCTGATGAGTTCGATCGCTTAAATCGACAGATTTTTCAACTGCTCGATCGTTTAGTTTGATGGGGATAAGTTTTGAGATGGAGGGGGTGCGAGGCTGGGGCGATTTGGCTGAAAGGGTGATTGTTTCGTTGGGAGCCTCGATGCCTTATGGGATAAGGGTTTTGCCGCATTGTTTGGGGTTAAAGTTGATGAAATTATTTGTTTTTGGACTGAGCCTCGCAAACCGCTGCTGGACGTTAAGCGGGGATTGAGTTTCAATGGAAGGG # Right flank : CTGCGCCAGTTAGTTCGATCGCTGTACAACAATTTTTCCCACCCGCGATCGCATCACTCTATCTTTCGCAATTTGATCAGGGAGCACAGACAATGATCATCTACAGAAAAACCTCATGTATCTTTCAAATCGCGCCCTACAAGTTCGCAATGCCTCGATTGCCGGAATCAGCGGAGCCTTAACCTTAGTTATTCTGCTGATTGCTCCATTAGGATTAGCAGCCGTCATCATCAACACCCTGCTTGTCACGATCGCAACTTTTGCCACCGGAACTGTCGTCGATCGTGTCGTCATTTCAATGCAGCGCGATCGTAATTTACCTCCAACTGCTGACCTTCGCAGACGAGAAAGCAGCAATGTGGATCGATATCGGTAGTAGGACGCAGTCGTGAAAACGCTCTATGTTTCTCACCAGGGTTGCTATCTATCACTGCGACAAGAATCAGTCTTGATCAAACGAGGTGAAACGATTCTGGATCAAGTTCAGTTGCCACTGCTAG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 451789-453312 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014644.1 Leptolyngbya boryana dg5 plasmid pLBX Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 451789 36 100.0 42 .................................... AAGAGTCGCTTCTTTAGTAAAGAAAGCATTAAGCTCAGCTTC 451867 36 100.0 38 .................................... GAGCATACTTTACCAGCCCATTGAATTCCTTCTACAGT 451941 36 100.0 41 .................................... AAGGTTTGGATTTGCATTATCGTGATAATGCTTATTAGCTT 452018 36 100.0 38 .................................... CATTTCTTCTAAAGTAGAAGGAACAGGTTCGAAGGGTT 452092 36 100.0 41 .................................... ATAAGATCACCCACAAAAGAAAGCTGATATTTATTACCTAA 452169 36 100.0 41 .................................... CCGGGATTAATCCCAGCCAAACAACTCCAATTTCACTGGCT 452246 36 100.0 40 .................................... GTCAGGGTTGATACCATACGCACCAAGATATTCTCTCCAC 452322 36 100.0 41 .................................... ATAATTTGGGGGGTAAGCTGCGCCAGCAGCAACATACGGTG 452399 36 100.0 49 .................................... TCACTTGTATTCCTGTTGAGAAATATAAGGAAGCTGCTCAAAATGTGAG 452484 36 100.0 41 .................................... ACACGATCGCCCCTCTTCTCTGTCAATCCCTCATAATACGC 452561 36 100.0 46 .................................... TTTCCACCTCTTTACGAGAGGAGCCAATCAAAGCTTCGATTTCTGA 452643 36 100.0 40 .................................... TTGCTGTATACATGGATCTCTAGCGTTTTTCTTGTGGTAC 452719 36 100.0 46 .................................... GCACAGACACTTACCTCCGGGGACAATCCCGTAGTGATCGCAGTGG 452801 36 100.0 43 .................................... TTTAACTGGTTACGCATGAGCGTAAGATGTTGGATGTCTTCCG 452880 36 100.0 39 .................................... CTTCAATCAACATCCGGGTGGCTTCTAATCGTTGCTCAA 452955 36 100.0 52 .................................... TTGAATAATTTGCTGAATAAACTGAGATTTTTGATGAGCTGTCCAATTGCAA 453043 36 100.0 41 .................................... CCCTACCCAAACAAGTCATCAAGTCCGCCAAGATTTCTGTT 453120 36 100.0 39 .................................... CATCGATCGTGCGTCGAATCGTCGGATGATTACGAAATT 453195 36 100.0 46 .................................... ACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAG 453277 36 94.4 0 ...............................A..G. | ========== ====== ====== ====== ==================================== ==================================================== ================== 20 36 99.7 42 GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Left flank : ATCTGATTCGGTGAAGTGGAAGCGGGATAGATGCTAATTTATGTAGTGACCTATGATATTCCGTCTGATAAGCGGCGGAAGAAGATAGCGGATTTGTTGGAAGGATATGGGCAGCGGGTGCAATATAGTGTGTTTGAATGTGCACTTTCGGCTGTGAAGTTCAAAGAGCTTCGGAAGCGATTGCAGCAGCGCATTAAGATCGAGGAGGATAGTGTGCGGATGTATCCGATTTCGCAGCAAATGTTGCAGCAGGTTGAGGTTTGGGGTGGAGTGGAAATCGTGGAACCGCCGGGATCAACGATCGTCTAGTGTCGTATTTGCTGCGAGGCTCAGGAGATTTGCTTGGAAGATTCATTATTTCGTTGGGAGCCTCGCAGCCTTTTGTAATAAGAGTTTCAGCGTTTTTTTAGGAAGTCAGAGAGCGCATTTTTTTTGTTTTTTGCTTGACCCTCGCAAACCGAGCCTAGACATCAAGCAGGGTATAGGTTTCAATAGGAGGG # Right flank : CTCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACCGTTCTCACTCGTTGGGAACCACAATTGAATGGAAACCTTCCAGTTGCGCCACGGTCGCGATTGCATCAAGTTCTCACTCGTTGGGAACCACAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 453718-454116 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014644.1 Leptolyngbya boryana dg5 plasmid pLBX Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 453718 36 100.0 33 .................................... CTTCCAGTTGCGCCACGGTCGCGATTGCATCAA 453787 36 100.0 35 .................................... TCATTGCACCTTTAATAGGCAAGCCAAATGCACTT 453858 36 100.0 36 .................................... ATACGCCATTTTCCATTAGCAGGGTTATAGGTTCGA 453930 36 100.0 37 .................................... GATGTTGATTCCTTCTCCCGAATTAGGGTCGGTAATG 454003 36 100.0 42 .................................... CGCAGTGCCCTCAATGATATCCATCAGTGGATCCGCGATATC 454081 36 94.4 0 ............................G......A | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 99.1 37 GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Left flank : ATTGAATGGAAACACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAGGTCTCCATTGATGGGGGCAAACAATTGAATGAAAGCTCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACC # Right flank : AAACCGGACAGCTTAGTTCGATCTCATTCCTGAATACTGTTGCATCATCAAGTCAGCCAGGAGCCAACCTCCCTCAACCTGCAATGTTTGATGCACCCCTTCCATCACTGTTGCAGCAACAACTAAACCGCTTGCTTTCGTCCAATCAAACCGACGGCTGAAGCCATCAGGGATCACAGAAGACGATCGTGGTGCAACTGATAAATTCCAACCCTCTACGATTGCTCGATAAAGGTAGCCAACTAGATTCTGAATCGTGCGCGGCTTTTGCTAATCTTTTAAATAAACGATCGCAGGTTCAACCCGCTCTGAGAATTCAGCGATCGCTCTAGCTATTTAACTTCCGAATATTTCCCAGAACCAGCTGAGGCAGTACAGTCTGCCTTAGACCTTGGCACTTTCTCCTCAAAAGCTTGATCGAACTTGAGTCATGAGTTGATCAATCGCTTTAAGATCTGTGCAACAACATGCAGCTCATTGCCTTCGACGGTACTCAGAGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1946601-1947158 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014642.1 Leptolyngbya boryana dg5 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1946601 37 100.0 36 ..................................... ATTCGGAAACTCCCTGCACAACTCGGCAAATGCCCG 1946674 37 100.0 37 ..................................... TCCCCTTAACTAGGCATGATATGCGATCGCTGCTTAG 1946748 37 100.0 36 ..................................... GCTAGGAATTTATCTGAAAGATATCCCTCGACTGCG 1946821 37 100.0 43 ..................................... GAGAAGCCAAACAGACTTAAGCCTGCACAAGCAATTCACTCAA 1946901 37 100.0 37 ..................................... AAAGTATGAGAAAGTTTCTGACGCAATATCAGAGAAC 1946975 37 100.0 36 ..................................... CTCAGTCGAAAGTATTGCTGAGGCGTTGGGGATAAA 1947048 37 100.0 36 ..................................... GGCAAGGTTATTGCCGTCAACGAGCAGTATCAACAT 1947121 37 100.0 0 ..................................... | G [1947156] ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 100.0 37 GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Left flank : CCTCTTTCAGGCACTCCTCAAGAGAAAGCAAGAAATTTAGCGATCGCAGCATACCAATCTCGAAAATAGAAATTACTTGCAATTAGTTCAAATGTATTTTATAAATAGAGTGCGCCGTGGTTCATGCTAGCAATAGCCCCTGTGCCATCGACAATTACGAGCTAGTTTGACTGTCGGAAGATAGTCTTGCTTTCTGGCTCAGGTTGACTGTCTACCTCGAAGTTGGGTGCGCTCCCAGCAAAAGGGTGCGGGTCTACCGCAATGCTGGTTAGCCAATCTCACCTCCGAGCAAGGAGGAATCCACCCCTAACTTTTAACTTGTTGGCAAACCGAAGCGAGGTCAAAATCCCTAGGAGGTTTGCCAATCCGTACAAACTAATCCCTTCAGCAGCTTTCCACAGCATAAAGCTGCTTCTTGTCCAACAAAAAGTATCGGATTTAGAGGGGTTTGCCAAAACCATGTTTGAAAAGCACACTATGGCTGCACCTTGAATGGCAGG # Right flank : GTAACTTAGTCTTTTGACAACTTTAATAGGCACAATCTTTCGGTTAACAGTGGGTGGATTGAAAGGACTGCCTGACTCGGGGTTTTAATTTAGAAATATTTGCCCCTCGCTATAACGAGCAGAGTTAGCATTCGTTTTAACTGGGTAGAGTCTGTACTGTAAAATGTTGAAGTGGATAAGAATTTGAATGAGCATTCAACTGCTTGAAGCTCTGATGACAAGAATTTGTTAACGAATGATTTCTTACCCCTCGACGACAAGAAGCTGTTAAAACGACACTAAATTGTTAACGACGACATCAATCCGTTAACGACGACAAATAAAGTGTTATTCGACAACAATCACACGAATTTAAACAAAAAATTGCCTGACTCTTAAAAGCCCCCAGAGTCAGGCAGTCTACCTGTAAGGCACGCCTTTAACCGGATACACCAAACAAACTTAGTTGCCCCCTAGTTGCTTAGCTTTTCCGAGTGCGTTCCTCAGATTTGAATCTATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 5783575-5783321 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014642.1 Leptolyngbya boryana dg5 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 5783574 38 97.4 35 A..................................... TCGAGAATGAGTTGGGGAAACCCCACCAATGCTCG 5783501 38 100.0 33 ...................................... TTGGGATGATCAGCAGCTCAATCAGTACGCCGA 5783430 38 100.0 34 ...................................... AAAAGATGATGCTTGTTGTGCCAGCTGATCGGAT 5783358 38 92.1 0 .A....A.................G............. | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 97.4 34 TGTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Left flank : CTGAACTGTGAAAAATGAGGGTCAGTTTGGTCGTTGTGAGACGACTGTGCTTTCCGACCCTGGTAGCTGCCCGCTCGCTGACTGCCATCCTGGTACAGGTTTCGATTTGAGATTTGTGTGGGGATGGGAAGCTGTAGTTGTGGAGCCCGTTCTTCAACTATAGCGCAGGTGCGCGCCCAGCAGAAGTGAGTCAAGCCTCCACCTCGTGAAGGCACAGGGGCATTATCTCATCAATTACTTGGTGCTGATAGTGTGACTGAAGTTGCAGCTACTGAATCGCCTCCGAGCAAGGAGGAGTCCTCCAATTCTTTTTGGCAAACCGCAGCGAGGGCAAAATCCCCGGGAGGTTCGCCAAACCGCTAGGAGCCACTACTAGTGAACCTTTCATCCAGTTGAGGTATGTCGAAGTAAGTTTTCCAGAAAGTTGAAAGAGTACTTTTTAGCGAGGTTTGCCAAAAGGCAGCTTGGAAAGCTTACAGGAGAAGAATTCTAGCGCTGGG # Right flank : CTCAGAGCAGAAAGTATAAATACTATGAGCTCAATGTGATTGTTGAAACATCAAATTCAATTAGCCTCAGCAAGAGGTAGCAAGTTGAATTTATAAACTACTTAACTACTAGCAACTTAATAAATCCAAACCAAAAGAGCTAACACACTAATATTTTCTATTGGAGGACTGAAAGGTGCATTCGATTCGTAATTGGTCAGCATTCTTTCTTGATTTCAAGTGACATAAATCTGCAAGTCGCATTATTGAAACAAATAGCGACATTAATCTGCGAAGAGCAGGGATTTACTAATTTGCGACACTAATTTGCGAAATGATATCCATATTGCCAAAAATCATCAAAAACGACATTAATTTGCGAATTGCGACATTTAATGTGCGAACGTACATAAAAAGCCGATGATGGGATTTGAACCCATGACCTTTCGATTACGAATCGAATGCACTACCACTGTGCTACATCGGCAAAAGGCCTCATGCAGTATAACAGATAATCGTTC # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //