Array 1 343779-345088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTX01000002.1 Escherichia coli strain MOD1-EC6706 MOD1-EC6706_2_length_461254_cov_61.7502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 343779 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 343840 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 343901 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 343962 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 344023 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 344084 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 344145 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 344206 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 344267 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 344328 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 344389 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 344450 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 344511 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 344572 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 344633 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 344694 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 344755 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 344816 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 344877 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 344938 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 344999 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 345060 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 360590-361413 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTX01000002.1 Escherichia coli strain MOD1-EC6706 MOD1-EC6706_2_length_461254_cov_61.7502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 360590 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 360652 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 360713 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 360774 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 360835 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 360896 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 360957 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 361019 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 361080 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 361141 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 361202 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 361263 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 361324 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 361385 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //