Array 1 422510-424551 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEH010000001.1 Salmonella enterica isolate 0171_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422510 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 422571 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422632 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422693 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422754 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422815 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422876 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422937 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 422998 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 423059 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423120 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423181 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423242 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423303 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423364 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423425 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423486 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423547 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423608 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423669 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423730 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423791 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423852 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423913 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423974 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 424036 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 424097 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 424158 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 424219 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 424280 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 424341 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 424402 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 424463 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424524 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440684-441854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZEH010000001.1 Salmonella enterica isolate 0171_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 440684 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440745 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440806 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440867 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440928 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440989 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 441050 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 441111 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441173 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441276 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441337 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441398 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441459 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441520 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441581 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441642 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441703 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441764 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441825 29 96.6 0 A............................ | A [441851] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //