Array 1 152869-154227 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFFS01000001.1 Streptococcus thermophilus strain KU30 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 152869 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 152935 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 153001 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 153067 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 153133 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 153199 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 153265 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 153332 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 153398 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 153464 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 153530 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 153596 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 153662 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 153728 36 100.0 30 .................................... CACTAGACCACGCAAACTATAAAATAAAAA 153794 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 153860 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 153926 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 153993 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 154060 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 154126 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 154192 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124910-127319 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFFS01000002.1 Streptococcus thermophilus strain KU30 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 124910 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 124976 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 125042 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 125108 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 125174 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 125240 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 125306 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 125372 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 125438 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 125504 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 125569 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 125635 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 125701 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 125767 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 125833 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 125899 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 125965 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 126031 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 126097 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 126163 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 126229 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 126295 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 126361 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 126427 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 126493 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 126559 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 126625 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 126690 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 126756 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 126822 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 126888 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 126954 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 127020 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 127086 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 127152 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 127218 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 127284 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //