Array 1 2084715-2086302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020335.1 Photorhabdus akhurstii strain 0813-124 phase II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2084715 28 100.0 32 ............................ ATTACGCAATGCGCCGAACGCCGAAGAAACCG 2084775 28 100.0 33 ............................ CTTTATCGTCAGTTGCTATTGACCAAACGGCCT 2084836 28 100.0 32 ............................ AGAGATAGAAATTGTTTACCTTCATTTTGACA 2084896 28 100.0 32 ............................ AGCGACCGACGCGAGCCGCGCTCGGTGCATAC 2084956 28 100.0 32 ............................ CTCTCGATAAATACGACGATAAAGCAGTCACA 2085016 28 100.0 32 ............................ TATTTCATCCCATGTTTCAAATTGTTTTTTAT 2085076 28 100.0 32 ............................ GCCGATTCGTGGCCTATTATTGTTAAGAATAA 2085136 28 100.0 32 ............................ AATCACATTCAAGTGCATTATCTCGTTCCGTG 2085196 28 100.0 32 ............................ TCTATGGGAGGTACGCGTATTATTCAGATTCT 2085256 28 100.0 32 ............................ TAAATACCTATGGGTGGTCATTAAGATATAGT 2085316 28 100.0 32 ............................ ACGCTTGGGGAGCTAACAGTCAGCGTCACAGA 2085376 28 100.0 32 ............................ TTATCGGCATCCTGAATTTTCAAGTGCAATAT 2085436 28 100.0 32 ............................ TGAGCGGGAATAGTATAAGCACGAGTCATACT 2085496 28 96.4 32 .............T.............. GAAGTGACCGGGGGCGATATTTCTCTTGAAGC 2085556 28 100.0 32 ............................ AGAATGTACCAGAAGTGACTTTTGCCCCACCG 2085616 28 100.0 32 ............................ AAATTTGTTGGGTGATTAAATGGCAACGGTAA 2085676 28 100.0 32 ............................ CCGGATCGACTCCCCGACTATCATCCCATCCT 2085736 28 100.0 32 ............................ TGGTATTTTTGGCGTGGGGAATATCGGTGATG 2085796 28 100.0 32 ............................ AAATCAATGTAGGCTTGCTGCGCTTTCATCAA 2085856 28 100.0 32 ............................ TACTTGATACCAATCATTATAATAACCTGCTC 2085916 28 96.4 32 .C.......................... GCTGCGTGCCAGCAACGGTTATGGTACTACTG 2085976 28 100.0 32 ............................ AAGGATGCTGAGAAATGGTACATCCAAACACC 2086036 28 100.0 32 ............................ AGGATGGCTTTCGACATGCTCAACTCAGCCCA 2086096 28 100.0 32 ............................ AAAATATGCACTAGCTGCTAGTACGTCATGGT 2086156 28 100.0 32 ............................ ATTGAGTAAACTAATAATTATCAAGGATAGTG 2086216 28 100.0 32 ............................ TGTTCATGTTCGCGTTAGGGATGAAAACGGCC 2086276 27 92.9 0 A.......................-... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCAGAGGAAGCAGGTCTGGAAGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCGAGACTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTAGTTTCTAATCAATGGACGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGCGTTGGATGAGAAATGGTGCCCGGGTTCCAAGTGTTCAAATAATGTTTAAGTTGAATATTGAGTTTACTGTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATTTTAAGGCAATTTTGGTTGTTCTTATGGTTGCTAAGTTTTGCCAGAATCTACACTTTTATTGCTATAAGATAGGTGTTTTTGCTGTACCCCAGTTTTAACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAGTATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCATTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGAGATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2116007-2117054 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020335.1 Photorhabdus akhurstii strain 0813-124 phase II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2116007 28 100.0 32 ............................ TTTTGGCGCTCTGAACTTACGTAAAAACCCGG 2116067 28 100.0 32 ............................ AGATTGTGAAGATGGATTTATTACCGTTCGCA 2116127 28 100.0 32 ............................ TTTCCGCCAGCCCTGATACTTCAACTTTTATC 2116187 28 100.0 32 ............................ AATATGACCGTTATATTGCAAACCAGACATGC 2116247 28 100.0 32 ............................ ATTGTTAGGCTGCTCAGGCCAGGATAAGGTAT 2116307 28 100.0 32 ............................ GGGGTCGTGGCCTATTTGCAATTCATCGCCAA 2116367 28 100.0 32 ............................ TTCAGAGACTGCTAGGCAGTCAGATCGTTTAT 2116427 28 100.0 32 ............................ GTAGGGTTGGCGACTGGAAGAGTGATTTGGTC 2116487 28 100.0 32 ............................ TGTCTAAAATGTCCTGAACGCCAGTCATTTTA 2116547 28 100.0 32 ............................ TGTTATAGACTGGGAAATTAGTTTTAATGCGG 2116607 28 100.0 32 ............................ CTCCCAATTTGGTATCTTCTAATATATAGCGT 2116667 28 100.0 32 ............................ GGAAAAGTGACAAGGCTGACTTCCCACAGATC 2116727 28 100.0 32 ............................ TGTTATGTCATGGCTTAAAAAGTTGGCGACAG 2116787 28 100.0 32 ............................ ATCCACCGGTCAAGACACAGTGTGCCCTTGAA 2116847 28 100.0 32 ............................ TAAGAAGTACAGCACTGCGCCGTTGCTTAAGA 2116907 28 100.0 32 ............................ ATCAGGCAGAATCAGGACAACATCAAGAAAGC 2116967 28 100.0 32 ............................ ATAAAATGCGCTCTGGGGAGATTCGGTTTGTT 2117027 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGCATATGGCCCGACCCGAGTCAAAACAGATATTGAGTCAACGGAAGAGCCTGGTAGAACCGGTATTTTCGGCATTACGGGGAATTCAGAGACTGGAACGCTTTCGGCGTAAGGGATTGTCAGCGGTAAAGCTGGAGTTTTCCCTGCATGCAATGGCCTATAACTTATCAAGAGCGGTGGCTCTGATATTAGGGATTATTTTTAGCCTGTTATCCATACAAATAACAGGCTGCCCAAAGTCAGTGATTGAATTTAACTTGATGCTTGAAAAAGTGACCTTAACCTTTTGCGACACCCTCTTTACGGCGGGGAGCAGTCACGACAGACGACTTAAGTATGTGATGATATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAATTGTAATTGATTGATTTTATGGGTAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATGTTCTTTGAAAATCAGCATGTTAAAGTTAATATGTAACA # Right flank : ATAGAAAGTTTTCTTCTTCTTTAAACTATCGAGTGTGCTGCTACACAAATAGCTTAGAGCATAATCATTCCTGTTTAGGGAAGGTACTATGCTGTGAATTAGTAAAGAATTGTAAATTTTTTTGATTTACCTCTGTGATGTTTTACTTGTGTAAAATTTATGCATAATATTTACCATAAATGAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCTAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGCCGTGTTGAGTATGTCACTGATGAAGGAAAGCAGTCCCTGTATTGGAATATCCCAATTGCAAATACTACCGTTATCATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGTGGTGGAGGTACACCGCTATTTGCGGCTAATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2126035-2126541 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020335.1 Photorhabdus akhurstii strain 0813-124 phase II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2126035 28 100.0 32 ............................ AGACTTGGTACTCGCTAACAATATCATAGTGG 2126095 28 100.0 32 ............................ GTTGTCAGGGATTATTTCACTCTCACCGAAAG 2126155 28 100.0 32 ............................ ATTCAGGCAACATGATAGTGGCCGTTGCTGGA 2126215 28 100.0 32 ............................ TGTTCACCGGACGGGATTTGTAGTGATGGGCT 2126275 28 100.0 32 ............................ ATCCGTGATAGCCGTAAAGTTGCTGATAGCTT 2126335 28 100.0 32 ............................ TTAATTGTTTTCTCTTGCTGAGAAACAACAGC 2126395 28 100.0 32 ............................ ACGCAGAGAGGATAGCAGAAATGATAGAGAGT 2126455 28 96.4 32 A........................... ATTTTTTCACACGCGAAACCGTTCGTAACGTT 2126515 27 89.3 0 ...........T.........-C..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGTAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAAGAGCAACGTACTCATTTACCATTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACATCAGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : AAAAAAGAGTTTTGCTTTATTAATAGCAGAACTCTTTTTTTCCTTAAAATTTTGTATTAATAATACTTATTGACGTGTGTATCTTAAGAAATATTTAGGGAATTGAGAACGATATGCCCGTAGGAAAATAATGTGGCTTTGCCTGATAAATGCACCCGATCTCCATGTAATTCACACATAATGTCTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCTCCAAAATGGGGCTAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACACCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCACCTAGTGCTGTTATGACAACTCCTGGCAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTATGGTTTCGAGTAAACAAATGTAGCGATTATGAGAGACAAAAAGCTCGGATATTTTCTGACTTAATGCATTTTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2127745-2128013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020335.1 Photorhabdus akhurstii strain 0813-124 phase II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2127745 28 100.0 32 ............................ AACCATGCCAATAGCCCGTTCGATCAACTTAT 2127805 28 100.0 32 ............................ TGTTGACGATCCCAGTAAAGACAAATGCTCCG 2127865 28 100.0 33 ............................ CGATAGCATTCGGGTTAAACCTTGATTCTTCTT 2127926 28 96.4 32 G........................... ATACGAGCTAAAAACTCCCGGTATTGGTTTGT 2127986 28 75.0 0 G..........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 5 28 94.3 32 ATTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAACCAACGTAGGTGGTTATCGACTAGGAAAGCAGTTTCAGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAGAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTATCTCTCTTAAAATAGAATTAGTCATGAAAAAGGGATCAATCTTCTTAATTTTTATAAAAAAATTGCCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGTAGCTCAGTTTTAGGATATTTAGTTGGTTTTCTGAAGCATTGGATATCATTGCATTAACCAGATATGCGACCCTATTTTTACCCTTTTTTTGCGGTTAATTTTAACTTGTTGATTTTTATATAATATTATATTGTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACT # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGTATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACTGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCGTCAATAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2348774-2349042 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020335.1 Photorhabdus akhurstii strain 0813-124 phase II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2348774 28 100.0 32 ............................ TAAATTGTACGTTTGTACGAAGGTACTCCCTT 2348834 28 100.0 33 ............................ CTATGCCGATTAATGCCGCAGACAATGCTTGTA 2348895 28 100.0 32 ............................ AATGGTGCTTATAATCAACACTTAAGCCTTGT 2348955 28 100.0 33 ............................ CAAACCCGAAAACTGGTCAGATGAGATACTGGT 2349016 27 85.7 0 ...C................T...-..T | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.1 33 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTTTAACCGAAAAATTTTAAATAAATGAAAATATATTTTTAAATATTATTTTTTAGAGAAATTATTTAATCATGATATTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTTCCATAGTAACTACTGAAAGATCAGGCCGATATGAAGGATATATTGTTACAGAGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTATATCCCCATATCTCCGAATGGGAAAAAATCAATTTTGTTGAGTGATGAATGAGATAAGGTAGAAGATTTATTGAAACGTAATCGTTAGCTAAGAAAGTTGCGTCAGTGGTAACTTAAAAACTTGAGCCTCTCTTGACCTAATTTTTGACCCTTTTTTAGTAACCAATTTTAATTCATTGATTTTTAAACAAATATTGTTTTCCCCGTAAAAAAGGTTTTTTTATTTTTTATAATGATTACACTTTAACATTCAGTAGGTTGGGGTTAATATGTAACA # Right flank : TTCTTAAAGTTCTAGGTGTAGTTTAGAGTTATAAAAGCAAGGAATTTCTATCGAGTGATAAGACTGAAAATATTGGCTTCATATTGAGATTGGTAAATACTCTACCTCAAGGATGAGGTAGAGTATAAATGAGCTTGAGTTTTAATTGAGGTTTTTCTCGTTTTACATGAAGCTACGCAAGCTTTATCAGATTAAATTTCCCTATAATCCAACTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATTTTAACTCCTTTGCTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAGTTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTTTGAAAAATTGTTCATATCTAAACCTGCGAAATATATTTTTTTATAGCCTAAAAACAATGCTATTTGCAGAGCGGAATATGCAACTGTTGTTCCGTTATAAAATCCAAGATTCAAGTTCAA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 2445377-2445524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020335.1 Photorhabdus akhurstii strain 0813-124 phase II chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2445377 28 100.0 32 ............................ CCTCGAACTCACCGCTGTCGCTGACTGATTTC 2445437 28 100.0 32 ............................ ATTTTAAAAGGTGGGACAACAAAACTGCCATA 2445497 28 85.7 0 .......................TAT.T | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGTCAACAAGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAATTGTTGGAACGATTGGGTTTTGAACGTGAAGGTTATGCCAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCATTGACAGATGACAAATGGAGTGGAAAAAGTTGATTATTAAGCTGTACTGTCACCAAATAAAGTAAATTAAATTAGTAATGATGAATTAAACCATCGTTGAAAGTTAGCCTTCCCCGTACCTTATTTTTGACCCTTTTTTAAGGGCTGATTTTAATTTATTGATTTTTAATGGAATATTGTTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATGCTTTAATCGTCAGTAGGTTGAAGTTAATATGTAACAGT # Right flank : TTAACGGAGGCAACTATGAGTTATACCCGTTACGAAACTGATGTGGTCGTTTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATCGATATAGTTAATATTGTCGAGGAAATTGAGGATGTGGGTAAGAGTGAAAAACGTGAACTAGCAAGTCGTATGGCAGTTTTGTTGTCCCATCTTTTGATGTGGCAATTCCAGCTTGAGCACCGTGGTTCAAGTTGGCAACGAATTATCAAGGAACAGCGAAAGGCACTGGCATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGTCTGATGCTGTTTCTTCCGCTGTCGATGAAACCGGACTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAGGAGTTCTATCCTGATTAAACTTCAATGAGTTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTT # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //