Array 1 65476-63738 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULO01000006.1 Scrofimicrobium canadense strain WB03_NA08 seq6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65475 29 96.6 32 ............................C TGGCCGGGTCATGGGATGAGGACATGGGTGCA 65414 29 100.0 32 ............................. ATAACCACCAATGTCAGCCATGACAGTAGACG 65353 29 100.0 32 ............................. GTCGTGTCTCTCTAGTAGCATGATTGTATCGC 65292 29 100.0 32 ............................. CCATCTCAGAGCGGCTTGCAGAGGGACCGAGG 65231 29 100.0 32 ............................. TAAAAGGCTAAGCCCTAAAGCTTAGCCTTCTA 65170 29 100.0 32 ............................. GTCCACCGCGTCGAGTTGCGTTGAGTCGGGTT 65109 29 100.0 32 ............................. ATCACGCGGCGAAACTGCGGATGCTCGCTGAC 65048 29 96.6 32 ............................C AAAAAGGAGAAAACAGTGGACAGATTAGAGGC 64987 29 96.6 32 ............................C ATGCCGCTGATCGACCGCAAGCGCTTCGCACT 64926 29 100.0 32 ............................. AGACGAAACGGGGCCGGGGTACATAGACGGGA 64865 29 100.0 32 ............................. GGCTGTCGGGCATATACCAGTGGGAGCGCAGA 64804 29 100.0 32 ............................. CACGACTGCACGCACATTGACGGCGAGGTGCA 64743 29 100.0 32 ............................. TCAACCCTGGCGGCAACAGGCCGCCCCGGTCG 64682 29 100.0 32 ............................. GTCACGCGCCCGCCTTTGCGTCCATCGCGCAG 64621 29 96.6 32 ............................C GGGGACTCACCCCCAACCACGGGAATAGTCGA 64560 29 96.6 32 ............................C CATTTGCCGTCACCAGTAGCGAAATATGGTTG 64499 29 96.6 33 ............................A GATTGGTAGCCAACGCCTGATAGATAGGAATAC 64437 29 100.0 32 ............................. CACGCGGGGCATAGTATGTGCAATAAATGCTA 64376 29 100.0 32 ............................. TGACCTGGTCCCAGTCGGGGCAAGGCGCACTA 64315 29 100.0 32 ............................. TCGAGGATGCCACCATTCGCGTAGCCACGATC 64254 29 100.0 32 ............................. CAGATTACTCAGGAAAGGCAAAACTATGCAGA 64193 29 100.0 32 ............................. TCAAGCAGCTTGAGCCGAAGGCTGAGGCGTTT 64132 29 100.0 32 ............................. TGTTGGGGCCGGTGTCTTCTGGCGCGTTGATG 64071 29 100.0 32 ............................. TGCTTTACGACCGCTGAAAAGAAAGCATCGTC 64010 29 100.0 32 ............................. CGAAAACATGCGCTATAAGCTCGGAGAGATAG 63949 29 96.6 32 ............................C TGACCTGGGACTCTCAGAGTGGATAGAAGAAA 63888 29 100.0 32 ............................. GCGTAGGGGCCACCGCCGAATACCTGACAATC 63827 29 96.6 32 ............................C GTCGGCGCGCGCGTGAGCGATAAACTCGGCGT 63766 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCGCGCCCGTGGGGATGAGCCG # Left flank : CCAGCCGGGCTACGCGGTGACTTAACGAAATGGTTGCTTGAAGTAAGTTCAGGAGTTTTTGTCGGCAAAGGCTCTGCCAGGTTACGCGAAGAAATCTGGAAAAGAGTGTGCGAGCTTTGCCGAGATGGCAGGGCCATCATGATCTACTCATCCGATGGTGAGCAACGATTGCGGTTCAAGGTTCACCGTCATGAGTGGGAACCAGTAGATCTTGATGGACTGATACTGATGAAACGCAAGACCTCGGAGGGTAAACGGTATGGAAGACGAACTGGGTGGAGCAATGCGCGCGCTTCTAGGCGTGCGCGAACCCCGGCATGGAGCAGGCAGCGTGGAAAAAACGACAATATTGATGAGTGAAGTTACCTTTCCTAAAGACCATTCCAGACGGGGGAATGTAGGCCGTTTTGAGCGTGTTGGTCTTTTTTTGGGGTTCTACCTGTTTGTTAAAAGTGAATTAGAATCGCGGGTCCGTACAATATAATTGCTGGTGATCAAGT # Right flank : TCCTGCTGTCAGTTGGCGCAGATGCCGATCCCGTATTCCCCATTATTGCCCACTTTGGCGAACGGCTTGGCCGCAAATGGGTTATGGTTTCCACTTTGGCACTCATGGGGACTGCGACGTTCCTCGTGGGATGTCTCCCCAGTTTCGCCGCCATCGGCGTTGCTGCGCCGATCCTCTTATTCCTTCTGAGGCTCCTCCAGGACCTAGGTGCGGGAGCCGAGCAGTCTGGTTCAGCCACTCTTCTCACTGAAACTGCGCCTCCGGGAAAACGTGGTCGTATGTCGTCATCGGTGATGGTTGGTGCTGCCGGAGGAACAGTTCTTGGTACGTTCATGTTTGCGGTTGTTCAGTGGGTCATGCCGGAAGAGGCATTTATCAGCTGGGGGGTGGCGGATCATCTTCCTGGCATCGATTCTGGTTATTTTTGGTGCGTGGCTTATCTGCCGTCATCTCGCAAAATCACCTGTGTTTGTCGAGTTGAAGAACTCCACGGATGCCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGTGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106535-106750 **** Predicted by CRISPRDetect 2.4 *** >NZ_VULO01000001.1 Scrofimicrobium canadense strain WB03_NA08 seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 106535 30 96.7 32 .............................C CTGCCCAATGATCGGCATGAGTGTGCTCATGA 106597 30 100.0 32 .............................. GACAAAGGCGAAATAACACCAGCCCAATCAGA 106659 30 96.7 32 ...............G.............. TACCTCGGGCTGTGGGGGCACTATCTCACCCG 106721 30 86.7 0 .......T.......G....A........C | ========== ====== ====== ====== ============================== ================================ ================== 4 30 95.0 32 GTATTCCCCGCGCTATGCGGGGATGAGCCG # Left flank : TCAGATTACACGTCAGGATTGGCTGGCTGATGCGAACGTACTTGGAGTTGATCCGGCCTGGCTATCTCAGGAGATTGATCGGTTGGCAGGAACTCTTCCCGAGGTTAGCGCGCAGGTAGTCGACGATGTGCTAACTCAGTGGGGGCATTCCTCGATGGTAACAACTTTGAAGGGACGGATTGCCTCTAGCGTTAGGAACAAGGTGCAATTTTAGAGATTTTCGATGCGGCTGATGGTCGTAACTAGTTTGTCTCATGCGGGGGAGAATGGCGCAGTGTTCGATCCAGTCAACACTCTTGATAAAACTGGTATGGGAGGGGGTAGATATTTTACTGCTGCGCGTACGTGGAAATCGTCTATAGGAAACAGTAGATTGACTTCTGCAGCTACCGAGAACGTGGTTGCCGATGCTCTCAGCGAGAAACGTGCTTGAAAGTGTGGAACCTGGATGAAACTGAATTAGATATGCTAGATGTGGTTGTGTAGTCCCTGGTGGACAA # Right flank : CGCGCGAAAATCCTTCACCGTCCCACCAGCCTCGTATTCCCCGCGCTAGGCAGTTAGTACCGTCTTCACTGTTTTCGGCTAGCAGCTCGACCACGGCAGTTGCAGGGGAAGCAAATTCATTAATAATCTGTTCTGGATTTGCGGTGACTGCAGCGCGCCAAAGCCATGGGACCTTCTTTCTTGAGCATGACGATGCTCTCACGATTTCATCGGAGGTCTTTGCAAGTGTCTCCAGGGCGACACAAGACCGAAAGTACGCTTTTGAGACTAGCTCGGAGTCAGACCATAAGTAGAGCGAGATTCCGAGATTGGACACTACCGGACATCTGGTGATGTTACCTTGTCTGATGCTGACGAAAAATCTGCCACCAGTGGGGAAAAATTTGCCGGGGCAGTTATTGACGAGATTGAGAATCCCACGAGACGAAAGTTGCGAATTCGTTTCGCGTACCAATCCACCAGCTTGAGCTTTCTTGTCATTTCTCTACGTGCTTGTGGGC # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCTATGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.00,-14.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //