Array 1 964759-963351 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUM01000001.1 Pseudomonas aeruginosa strain CN573=PSE143 IPC705_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 964758 28 100.0 32 ............................ GATCCGGCGAACGGAAGCACGGGCGAAGCGAA 964698 28 100.0 32 ............................ AACAATGGCTAATGCACTGACTATCCGTATTG 964638 28 100.0 32 ............................ AGGTAGTGGATGAACAGGACTCTGCGAGGCCG 964578 28 100.0 32 ............................ CCTTCCCCTGGAGCAGCCGAAGCGCGGGCGCG 964518 28 100.0 32 ............................ GGCGGCCAGGGTTGCACCCTGGACGCAATCAA 964458 28 100.0 32 ............................ ATCAGGGGCAGCAAGGACGGCTCTTCCTGCAT 964398 28 100.0 32 ............................ TCCCCCGCTGCCGTCGCCGCCATTGCCGGTGC 964338 28 100.0 32 ............................ GCGATGCTCCGCTATCTCTCGCTGTTCGCGGT 964278 28 100.0 32 ............................ ACAACGAGGGCAGCGCAGACGTTTCATCACGC 964218 28 100.0 32 ............................ TTGTCGAAAGGCTGCCCGTTGCTCCAATTGAT 964158 28 100.0 32 ............................ TGGACGAGCACCAGGACGCGCGAAAAGGTACC 964098 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 964038 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 963978 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 963918 28 96.4 32 ...............T............ ATTCAGCCTTGGCGATGCACTTCTCCGCAGGC 963858 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 963798 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 963738 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 963678 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 963618 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 963558 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 963498 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCTCGCGCCTGCTT 963438 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 963378 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTTCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37803-38550 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUM01000012.1 Pseudomonas aeruginosa strain CN573=PSE143 IPC705_12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37803 28 100.0 32 ............................ AGGAAGCCCATGAGGACGCCCGGCCAGAACCC 37863 28 100.0 32 ............................ AATACGCTGGGTAGACAGGCCGCGCAGGTAGG 37923 28 100.0 32 ............................ TCGCGGATAGAAACTCGTCCTGGCAATTCGTC 37983 28 100.0 32 ............................ AGCATGGAGATGCCGCAATGATCGACCCAACC 38043 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 38103 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 38163 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 38223 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 38283 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 38343 28 100.0 32 ............................ ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 38403 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 38463 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38523 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48723-47074 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUM01000012.1 Pseudomonas aeruginosa strain CN573=PSE143 IPC705_12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48722 28 100.0 32 ............................ TGACTAGGGAAAGTTCGGAGGGGCGTTCAGCC 48662 28 100.0 32 ............................ TACGGAAACATTCGTCGTCAGGTCGATGCGGT 48602 28 100.0 32 ............................ ATATCCGGAGCGTAGGAGGGGACGGGCAGGGC 48542 28 100.0 32 ............................ AGTCAGGTGCCGCGCTCCCGGCTCGTCGGATC 48482 28 100.0 32 ............................ TGCGCATGGTGCCGGCCAGGAAAGATCGGCTG 48422 28 100.0 32 ............................ AGTTGGACACGATGCGGAAACCGAAACATCGA 48362 28 100.0 32 ............................ TGTCGAAGCTGCTCGACACCAGCGGGCGCTTC 48302 28 100.0 32 ............................ AAGCGGCTGCACAAGGACCCGGACAATCCGGA 48242 28 100.0 32 ............................ ACAACGAGGGCAGCGAAGACGTTTGAGCTTCA 48182 28 100.0 32 ............................ ATCGCCACCTGGGAAAAGAAGGTCGAGGAAGC 48122 28 100.0 32 ............................ TCAACCTGGCGGAAGGCGGCGGGCAACTGCCC 48062 28 100.0 32 ............................ ATCAGCTGATGGGTGAAGAGCGCAACATTGAC 48002 28 100.0 32 ............................ TGCTGAGCCGGCTTATGCGCCACGTGCTTGCC 47942 28 100.0 32 ............................ TCCTTGCATGCCCGAATAAGAGGTGACTACAT 47882 28 100.0 33 ............................ AAGATTGGCCGTCGCCGGGTGGTGAACCTGCAT 47821 28 100.0 32 ............................ AACGCACTGAAGCATCTGTCGCTACCCTATCT 47761 28 100.0 32 ............................ CATGGCATCGGCCTGACCCTGGAACAGCCCGT 47701 28 100.0 32 ............................ TACGAGTCCGGCAACGGCTGGCCTGTAGACGG 47641 28 100.0 32 ............................ TTGCATCGCACCAGCTTGCCGAATACCCAATC 47581 28 100.0 32 ............................ TCCGGGACTTCATCCGCAGGGTGGTCGTGCTC 47521 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 47461 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 47401 28 100.0 32 ............................ CTGGAGCGTGCCAAGACCCACCTTGGCATGGA 47341 28 100.0 32 ............................ TGGACCTGGGCAAGCTGATGAAGGGCCAACTG 47281 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 47221 28 100.0 32 ............................ ATCCTGCGTGCGACCTCTTTCGCGGTCAGTTC 47161 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 47101 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //