Array 1 52507-55341 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFFI01000004.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 14V215 NODE_4_length_316073_cov_26.0334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52507 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 52568 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 52629 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 52690 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 52751 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 52812 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 52873 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 52934 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 52995 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 53056 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 53117 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 53178 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 53239 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 53300 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 53362 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 53423 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 53484 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 53545 29 100.0 32 ............................. ATCGTGTTTATAAAACAACGGTCAATACTCGC 53606 29 100.0 32 ............................. AGTGTGTCGGTTTGCCGGGAGTGCCAAAGGGT 53667 29 100.0 32 ............................. CCAGTTACCCCAACGAATATTAACGTAAGAAA 53728 29 100.0 32 ............................. AACTTGCCCGGTTACGGGCGGGTTTCATATGT 53789 29 100.0 32 ............................. CGCGCCCGGGCGATTCTCTGGCCCGTTGCGCC 53850 29 100.0 32 ............................. CGGGAAACAATCATCGGGCAAGAAATCGACCG 53911 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 53972 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 54033 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 54094 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 54155 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 54216 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 54277 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 54338 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 54399 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 54460 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 54521 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 54582 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 54643 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 54704 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 54765 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 54826 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 54887 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 54948 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 55009 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 55070 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 55131 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 55192 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 55253 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 55314 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 72013-75280 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFFI01000004.1 Salmonella enterica subsp. enterica serovar Senftenberg strain 14V215 NODE_4_length_316073_cov_26.0334, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 72013 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 72074 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 72135 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 72196 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 72257 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 72318 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 72380 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 72441 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 72502 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 72563 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 72624 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 72685 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 72746 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 72808 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 72869 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 72930 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 72991 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 73052 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 73113 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 73174 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 73236 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 73297 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 73358 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 73419 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 73480 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 73541 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 73602 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 73663 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 73724 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 73785 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 73846 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 73907 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 73968 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 74029 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 74090 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 74151 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 74212 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 74273 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 74334 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 74395 29 100.0 32 ............................. GCGACGCGGCGTGGTTTTAACTGGCTGCGGGG 74456 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 74517 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 74578 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 74639 29 100.0 32 ............................. TAGAGAAGGGGAAAGGCGAATTTATCCCTTCC 74700 29 100.0 32 ............................. TTGTTCTGTCGCTGTCGTTAAACTCTCCGTAA 74761 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 74822 29 96.6 32 ............T................ AGATCGCCAACGCGCTCGGTTTGCGTCTGGAA 74883 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 74944 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 75006 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 75067 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 75128 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 75190 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 75251 29 96.6 0 A............................ | A [75277] ========== ====== ====== ====== ============================= ================================= ================== 54 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //