Array 1 4224184-4229912 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007166.1 Xanthomonas oryzae pv. oryzae PXO86 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4224184 31 100.0 35 ............................... AACTGGGCTAGCCCAAAGCAGCGGTCCGCCTTGCT 4224250 31 100.0 34 ............................... TGGCCCTGTGCAATGACCCATTGCCACTGGCATC 4224315 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4224382 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4224447 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 4224513 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 4224577 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 4224643 31 100.0 33 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCC 4224708 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 4224773 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 4224840 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 4224908 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 4224973 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 4225038 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 4225104 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 4225169 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 4225236 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 4225303 31 100.0 33 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCC 4225368 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 4225435 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4225500 31 100.0 34 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGG 4225565 31 100.0 34 ............................... CCAGGTAGGTGCCAGTGGCCACAACTTGGAAGAT 4225630 31 100.0 34 ............................... TGGTTACAGATGATCATGGGCGATCAGGCCGACA 4225695 31 100.0 36 ............................... CGCAAACCAGATGGCAAGTGGCAGCGGGGCAGCAAC 4225762 31 100.0 33 ............................... ACTAGCAGCCAGTTTGGCAGGCTGCTTTGCAGC 4225826 31 100.0 34 ............................... AGGAAACGGTCGCCATTGGGCAAGCTGCGGCGCA 4225891 31 100.0 33 ............................... TTGGGAGCCTATTAATAACATCTAGGACAACCC 4225956 31 100.0 33 ............................... CGTCAATTGTGGTGACAGTTGTTTGCAGGGCAC 4226020 31 100.0 34 ............................... TTGCAAAAAAGCAGCCAAGCCGCCGGGAGTTTGT 4226085 31 100.0 35 ............................... CCATTTACACCAAGGCCTGCCGGCGAGGTTGCATA 4226151 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 4226216 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 4226281 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 4226347 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 4226412 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 4226478 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 4226544 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 4226611 31 100.0 34 ............................... CCAGATGCTTGACATGCATGAGCAGGGTGTGTTA 4226676 31 96.8 35 T.............................. CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 4226742 31 100.0 34 ............................... CTTGAGGACTCGTCGGGCCGCCAGCTGTCTGTCC 4226807 31 96.8 34 ...T........................... TGCTGCATGCTTGCGTGCCAATGTAACCTGCACA 4226872 31 100.0 34 ............................... ACGGTGGCTGTTAGCTCCAGTACTGTGCTTGCAG 4226937 31 100.0 33 ............................... TGGCTGATCAGGCTGCTGGAGTAGATCCAGCTG 4227001 31 100.0 34 ............................... ATATAGATACTGCCTGCACCTAGGCTACCCACTA 4227066 31 100.0 34 ............................... TGCATCGCCTCGGCGAGCGCGATGATGAGCGCGC 4227131 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 4227197 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 4227261 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 4227325 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 4227392 31 100.0 34 ............................... ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC 4227457 31 100.0 34 ............................... TATTTCGCACGAGATGCGTGCAGCACCTGCGATC 4227522 31 100.0 35 ............................... AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA 4227588 31 100.0 35 ............................... TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC 4227654 31 100.0 32 ............................... CCATGCGGCGAGGTTTCCACGCTGACACTCCC 4227718 31 100.0 34 ............................... AGCACTGTGTTAGGTGGTATTGGTGGCTCGGGAT 4227783 31 100.0 34 ............................... TTAGCCACGATGGCATAAATGTCACTTGGCAGAT 4227848 31 100.0 35 ............................... TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG 4227914 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 4227979 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 4228045 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 4228111 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 4228177 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 4228242 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 4228307 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 4228374 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 4228439 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 4228506 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 4228572 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 4228638 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 4228705 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 4228771 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 4228836 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 4228900 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 4228965 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 4229030 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 4229096 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 4229162 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 4229227 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4229292 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 4229358 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4229424 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 4229488 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4229555 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4229620 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4229685 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4229752 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4229817 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 4229882 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 88 31 99.9 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //