Array 1 2227688-2227978 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072025.1 Akkermansia muciniphila strain Akk2000 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2227688 31 100.0 34 ............................... TAACTTTATGTAAGGCAAAGAATATGGAAGTTTG 2227753 31 100.0 33 ............................... GGGAACAAGGCCAATTTAGCATAGGAGCGGATT 2227817 31 100.0 34 ............................... CGAGCTTGGTTTCCGGCCTCCCTTCCGTCCGTTG 2227882 31 100.0 34 ............................... CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 2227947 31 87.1 0 .....................A..A....TA | G [2227960] ========== ====== ====== ====== =============================== ================================== ================== 5 31 97.4 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGCGCCGCCCGGGAGGCCTGTTGTGTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTGAGGAGGGTTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGTATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2468223-2469162 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072025.1 Akkermansia muciniphila strain Akk2000 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2468223 31 100.0 35 ............................... GTTAGTTTTCCTCTGCTCTGAAAGTTGCTTGGCCG 2468289 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2468354 31 100.0 34 ............................... TTTCAGTGCCATATTTTTAGTTTAGTTTAGTTTG 2468419 31 100.0 34 ............................... TCGCAGTACATTAACAATATGTCCCGCTCCGCAG 2468484 31 100.0 34 ............................... TACGCTTTCCCCGGTATCGACGCCGATATAACAG 2468549 31 100.0 34 ............................... TGGAAGCCGGAGCGCGGTATCGTCAAACCAGCTT 2468614 31 100.0 33 ............................... GCCAGGTCCTCCTTACTCTCGATTTTGACGCGG 2468678 31 100.0 34 ............................... GATGTGCGGACAGTCCTCGTATTTGACCCGGATT 2468743 31 100.0 33 ............................... GCCAGGTCCTCCTTACTCTCGATTTTGACGCGG 2468807 31 100.0 34 ............................... GATGTGCGGACAGTCCTCGTATTTGACCCGGATT 2468872 31 100.0 34 ............................... GGCAATAATGTGCCTGCTTGTTTGTGTGCTCTAA 2468937 31 100.0 34 ............................... CAGAAGAGCAGCAGGCCTTTGCCGCAGCCGAAAG 2469002 31 100.0 34 ............................... CAGTTTTTGGCCTGCTCCCTGGCGACAGTCCGCA 2469067 31 100.0 34 ............................... GATGGTGTTGCCCGTCACCTTGGTGTTCTTCCGC 2469132 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 15 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTCGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGATTTCAAAATGGCTGTGGAGAAAAAGTTGCTGGACGATGGACCCTTGACCATCTAGCATCAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGATAAACTGTTTGCGCCAACCTCAAGCTCACAGAAATTCCCCGGGAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTTTCCAATAAAATATAAGGGGGTAAGGAATATGCATCTTGAAAGAGGTTGGCGCAAAGGGCTGTTTGTACCACTAACTTTCAATGCATATTCCCTTCCGCC # Right flank : CTTTGTTGAGCGGGTTTCACGATCCTGTGTTGGCCGTCGCACCTGTAACGTCGCAGCGCATCGTAGAAAAATTATCAAGCATCGTGGAAAAACGCCCTTGAACGTCTGCCCGCTGCATCCCCATTGCAACCTGGTTGCACCTCCCTTGAAAACGGCTTGAACTGGCCTCCCTACTCCCCGATCACGTCCCTGGCGGCCAACTCGTCAAATACGCGAATGAATTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGCCCCTCCGGCCGTGATGCCGCCCAGGGCCGCTCTATATGAAGCGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACCCCCAATGGGCAGCCGGTCCAGAACTGCAAGCATCCGGCGCAACGCGGACCCCGTGAACCCATAGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2924900-2923120 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072025.1 Akkermansia muciniphila strain Akk2000 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2924899 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2924834 31 100.0 34 ............................... CTCCAACGGCGTCCAACTGGTGCATGTCATCCAG 2924769 31 100.0 33 ............................... TCCTAACACGCTAGCATTTAAAGCGTTATAATG 2924705 31 100.0 34 ............................... AGCGATTTCAATGCACGTCTGTTCCCGGTTTGCC 2924640 31 100.0 33 ............................... CTTGTTTTTCCGCTTGGCAAGCTTTTTCAAGGT 2924576 31 100.0 34 ............................... TTCGTAAAAATCCCCGCGCCGTACCCACCAGGAC 2924511 31 100.0 34 ............................... CGCCGTGGCATTTTTTAAACACTTCACAGAACAA 2924446 31 100.0 34 ............................... TGTTTGGCATGGGGCGTTTTTGCTCTATCCAGTT 2924381 31 100.0 34 ............................... AGGTGCTGACGTGGCATTCTTTCGGCCAGGACGG 2924316 31 100.0 34 ............................... CGTTTTTGGGGCGTCATGGTCAACTTCGTTCCCG 2924251 31 100.0 34 ............................... CCTTCGGAGGCTTTCTATCACCTCGGCCAGGGAT 2924186 31 100.0 33 ............................... AACTTTATCTCCTACCTTCACCCGCATGATGGG 2924122 31 100.0 34 ............................... AGGAAATACCTTGAAAAATATCTCACCGGAGAAA 2924057 31 100.0 33 ............................... CCTGGATTTTGCCAAGGCATCCCCTGTTTCCGC 2923993 31 100.0 34 ............................... CTGGTCTGGTAGCAAGGCAGGTTGGTTTGGAATT 2923928 31 100.0 34 ............................... TCTGCGGAGAGCATCATGCGGCCATATCCGCCGC 2923863 31 100.0 34 ............................... AATAACCCATACCCACTGATTCAGATTAATGGAG 2923798 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 2923734 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 2923669 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 2923604 31 100.0 34 ............................... ACGCACCCGCGCCTTGTACACCCCATCATAATAG 2923539 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 2923474 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 2923408 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 2923344 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 2923280 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 2923215 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 2923150 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 28 31 99.7 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : TCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //