Array 1 26187-30207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADRGT010000012.1 Porphyromonas levii strain DD21 JD34_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 26187 32 90.6 36 .....A......G....T.............. CGTTTGCACAAGGGCAAACTCCCGTCCTGTGAGTGC 26255 32 90.6 34 .....A......G....T.............. TTGACCGATGCGGGGTACATCAGCGTGTATCGGT 26321 32 90.6 34 .....A......G....T.............. CCTAAGGGTGAGAAGATACGCGTTGTGGCGATAC 26387 32 90.6 36 .....A......G....T.............. TGCAATACCTCCCGAACTGTCTTACCATGCCGCCTT 26455 32 90.6 34 .....A......G....T.............. GTCAAAGCTGACAGCAACAACCCATCCTCGTACA 26521 32 90.6 35 .....A......G....T.............. GAGAGATCTGGTAGCGTGACAAGCTCCTCCGCACC 26588 32 90.6 35 .....A......G....T.............. GTAAACATGCTGGCAGAGCTTACGGCAAGCAGCCC 26655 32 90.6 34 .....A......G....T.............. AACTTATAAAGAGAGGAACAGATGGCAGATTACA 26721 32 90.6 35 .....A......G....T.............. CTTGAGTCTATCGTACACCCTCTCGCCATACGCAT 26788 32 90.6 35 .....A......G....T.............. CCAACTCAAGAGACACCGCCCCAGAGAGTGGGTGG 26855 32 90.6 35 .....A......G....T.............. CCGTCTGCCGATGTAGCATAAGCGATGTGGAGGTA 26922 32 90.6 36 .....A......G....T.............. TCGGGATGTGGTATCACGCTGAGCATTGACGGAGTA 26990 32 90.6 35 .....A......G....T.............. GTCATTGTTCGTTGTGCTCGTTTTTACCTGTTAGC 27057 32 90.6 35 .....A......G....T.............. GGTTAATCCAAAACATGGCATGTACAAAGATTTTA 27124 32 90.6 34 .....A......G....T.............. AGCTCTCCACGTGTGAACTTAGGCTCTATCTTCA 27190 32 90.6 34 .....A......G....T.............. CGTTAGGCGCATACCTGATTTATTGCTACTCCCT 27256 32 90.6 34 .....A......G....T.............. GTAGATATCGCTCCACTGCTCGTCTGTCAAGCGC 27322 32 90.6 34 .....A......G....T.............. GAATACGCATAAAGATGTACATTTTTTAACTTAT 27388 32 90.6 34 .....A......G....T.............. GTTAAAGTAGAGCTTGCCAGACCTCTTATAGTGA 27454 32 90.6 35 .....A......G....T.............. TTTTAGTCTTGGGAGGACATTACACTCTATGTAAC 27521 32 90.6 36 .....A......G....T.............. GCATTGTAAACGATAAGACCTACACAATGTAAGTCT 27589 32 90.6 35 .....A......G....T.............. GAAGACATATACAAAGAGGCTGAGGTCAACGGGCT 27656 32 90.6 33 .....A......G....T.............. ATGCCTTTTGCTTTTAGCTCGTGCCACTCCTCC 27721 32 100.0 36 ................................ TGTGTGTATCTTTGCCATGAAGTTATTAATTTCTGC 27789 32 100.0 34 ................................ ATCGGCAAGAGCAAGGTGCTCAAACGCAATATAG 27855 32 100.0 35 ................................ CTAGTTATCCATCTGCGATAGATATAGTGAACATG 27922 32 100.0 34 ................................ AAAATAAATCTACTACATTTGCAGTGCGTTTTTA 27988 32 100.0 34 ................................ ACCACCATTAGCGGTGCGGACAGGGAGACGACGT 28054 32 100.0 34 ................................ ACAACGTACCTCCAGCAGGTACACACTACGAGGC 28120 32 100.0 35 ................................ CAGAGTATTATGCTGTAAAAGTGACCGGTGGCAAA 28187 32 100.0 34 ................................ GAGCTAGAAGAAGCCGTAAGGCTCGAATTGAAAA 28253 32 100.0 34 ................................ TTGGATACGATAGCGAGAGCTATTTCTCGCAGAT 28319 32 100.0 33 ................................ ATACATGCAAAATTGAAATATAAACTACTAAAC 28384 32 100.0 34 ................................ ATCTCTGCAACTCAGGCAGGTGGTAAGTTCCATA 28450 32 100.0 34 ................................ ATCGCTCCAAAGGATATGAACCTGTTAGTTATGT 28516 32 100.0 34 ................................ ATCTGCTAAGCTCTTGCTGTATGGTATGCGCTCA 28582 32 100.0 34 ................................ AATAACGAAGAAGCAAACGAATCGGCACGCCTAC 28648 32 100.0 34 ................................ TGTTATGTCGCATATTGTCAGACAGCTTATACGA 28714 32 100.0 34 ................................ GGAATCATCGGAAAATGGAAGAGAGATAGAGGAC 28780 32 100.0 35 ................................ AGCGAAAGGTAATGCAGTCGGCAGGAACCACGAAA 28847 32 100.0 35 ................................ TGCAGACTGTCGAGCAGGTATTGTATCCCTGCCAC 28914 32 100.0 34 ................................ CGTCTGCCGATGTGGCGTAGGCAATGTGGAGGTA 28980 32 100.0 33 ................................ GTTCGTTCGAGGTAAGCGTCATACACGTAGTAC 29045 32 96.9 34 ...........................A.... CTATAAACTAGGAGGGGTAGACTTCGAGGAGTAT 29111 32 100.0 35 ................................ TCACCCTTGATGAGCGTCCACTTGTACTTGCGCGG 29178 32 100.0 34 ................................ TTGTAAAGTTTAGCAGCAGGACAGGCGACCGCTT 29244 32 100.0 34 ................................ AATAACCTCATGGAAAAGCAGTCCAAGAGCCTCA 29310 32 100.0 33 ................................ ACTACTCTACTGGAGAACAGATTGAGACGCAGC 29375 32 100.0 34 ................................ GTTGAGTGTTCCGTCTCGTCTAATAACTTGCGTG 29441 32 100.0 34 ................................ TTGCGTTGGTTCTTGCGTTGGGCGGCTCAAAAAG 29507 32 100.0 36 ................................ AGCCAACAAAGTTTCCGGGTAAAAACTCGTCTAATC 29575 32 100.0 35 ................................ ACCACCTACACTGATAGACTCGTGTACAAGTGGGT 29642 32 100.0 35 ................................ ATCGACACACTCAACCGAGTTCCGTTCGATAGCGT 29709 32 100.0 35 ................................ ATCAGGTCAAGATGTAAAAACGACACTTAAGACGA 29776 32 96.9 35 ..........G..................... AAAATAGGGATGTCCTACTATGTAGTCTATGTCGC 29843 32 100.0 36 ................................ ATCATTAGACCCAGCAGCGACAGATTGGGCAGGCTG 29911 32 90.6 33 .....A......G....T.............. TTACATGACGACAGGGAGCGTGTTAGAGGTGTA 29976 32 90.6 35 .....A......G....T.............. AACCGCAAACAACGTAAGATACTTGACAAAGTCGA 30043 32 90.6 34 .....A......G....T.............. AACTTGGAGACGGTGTATAAATCCGCACCAAGGG 30109 32 90.6 35 .....A......G....T.............. TCTTCATCTATTTCTAGAGATAGAACATTACTTCC 30176 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 61 32 95.7 34 GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Left flank : TTTCATAATGAGATAAATATGTATATACTAGTAACATACGACGTAGCTACTTCCACAAAAAGTGGAGAAAGACGACTGCGAAAAGTAGCTAAAATCTGCCAAGACTATGGACAACGAGTGCAAAACTCTGTCTTTGAATGCTTAGTCACCCCTGCACAAAAGGTACAACTAGAAGCACAATTACTTGACGTAATAGATCAAGAGCACGATTCCCTGCGCTTTTATCACCTAGGCAGTAACTATGCTAGCAAAATTAAAACCCTAGGCAAGCAAAAAAGCTTTGATATCGAAGAAGAGCTGATTATCTAAAGAAAGAGTAAATGAATGATGAGGTGCGAACCTTAAGCAAGTAGCGAATCCCCTAGGTAATCGCACACACTATATTTCAAGGAGTTATAAAAGAAATATCTTTGGGTATTGAGGTGATGTCAGTCTGTAGGAACCCACTCGCGAAACATAGCTTTCAAAGTCATAAATAATCAGTATCTTTGTACTGAACG # Right flank : TAAAAAATCATTCGTCTCAAGTTTGCCTGAACAACCTCTATATCGATAAGCACCGAGGGGTAAGCGAGCGGCGGTCGAGAGTTCTCCGAGTACCCCACGGAGAGTTGCCCTGTATTCATACTCACTTGCCTAAGCGTAGGCACAGCCTCAGTGAGCTTGCTCTTGATGTCTTGATAAACTGTTTTCATTTCAACAACTCCTTTATGTCGTTAATAACTTCCTGCCGTATCTCTTGCGCCATCCGCTTAGACGCTCCCATAAATGGTCGCTTCGGCATGGCAAACTCTTTTTTGCCATAAACCTTAGCCTTAAGTCCATATTGATGCACCCTCGCATATGGGGCGGTATTCCTAACGACAATACCCTCCTTTGTGCGCGCATAGCTAAACGCATTGGAGAGATGCCCCGTTTCTCCAGAAAGGATTTTCGCCGTTGTGCGCGCAAGACTAAAGCGCCCGGTCTGACCGCTATGACCATACCAAGAGCTTTCAGGTTTTCGC # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACACGGGAGCGTGAATTGAAAC # Alternate repeat : GTCGCACCCCACGCGGGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //