Array 1 485325-486703 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTZ01000001.1 Ligilactobacillus salivarius strain FYNLJ23_2.scaf Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 485325 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [485328] 485402 36 97.2 40 .............T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG 485478 36 97.2 39 .............T...................... ACTTGGTACGTTGATTAAGAAAGCGTTGAGAGAATACTT 485553 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 485628 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 485703 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 485772 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTACTCAACG 485849 36 100.0 38 .................................... TTTAGAACGTGATTTAAAAGATAACTTTACAATTTCAC 485923 36 100.0 40 .................................... GTTCAAAGCGAATTTGATAGGCTATCAGATATCAAACGTT 485999 36 100.0 37 .................................... ATAAAATTGCAAAGAAAATTGTTAAAGAAGTAGGAAA 486072 36 97.2 41 ..................T................. CTGTAGGAATGGGAATGAACCGAGATCATGTAGACCATACA 486149 36 100.0 44 .................................... TTCATTGATATGTTGGTTAAAAATAATGATGGAACGTTTGATAT 486229 36 100.0 34 .................................... ACAAAAGACTAATCATAGTTACCTAGTAAGGGCA 486299 36 100.0 39 .................................... AGAAGGAAATAATGGCAATTATCATCTAACTGTTAAGAC 486374 36 100.0 34 .................................... TAGATACGCCAATGAGATATTTTGATAAAGCTAA 486444 36 100.0 37 .................................... GGTAATGAAACAATGTTTGATTATAAAGTGAGTGTAC 486517 36 100.0 39 .................................... GAAAAAATTATCGAACTAGACCAAGAAGAAGTTAACGAA 486592 36 100.0 40 .................................... AGGTTACGAAGCTAAAGTTATATTTAACGATGGTTTTGTA 486668 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 19 36 98.8 39 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : TATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAGTAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 48155-47470 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTZ01000005.1 Ligilactobacillus salivarius strain FYNLJ23_2.scaf Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 48154 36 100.0 30 .................................... TAGTTGTCTTGGTGTAATCAAAATTACCTA 48088 36 100.0 30 .................................... TGCAAAATAATTCTAGTTATTTTTTGGGAT 48022 36 100.0 30 .................................... CAACTCATGAATGACTTCTTTGGTTTCCTT 47956 36 100.0 30 .................................... TGCACCCAGTTAGATTTATCATAGTCAGGC 47890 36 100.0 31 .................................... ATAGCCAGTAAATTTCTTTGTATCTTTATCA 47823 36 100.0 30 .................................... CCAATTTTGCATTCACAACTGGAGCATCAT 47757 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 47691 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47571 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47505 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 10 36 96.7 36 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.44, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //