Array 1 28909-27719 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIW01000024.1 Salmonella enterica subsp. enterica serovar Newport strain 131174 scaffold24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28908 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 28847 29 100.0 32 ............................. GTTTACCGTTCGGCTGAGGCGCTGGCAGACCC 28786 29 100.0 32 ............................. CGCCACTTCGGATAAGTTTTTGAGATCCAGTC 28725 29 100.0 33 ............................. CTGATCGCCGGATACGTCGCGAGCGACATCGAG 28663 29 100.0 32 ............................. CCCTTGAAGCGGCTCAATTTCACCATGACGCA 28602 29 100.0 32 ............................. TAGCCGCGGCTCACCGTCTTTCGGTTCAGGCC 28541 29 100.0 32 ............................. CGGGCCGTCTTTCAGCGTCTTCCACTCGCCGC 28480 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 28419 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 28358 29 100.0 32 ............................. ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 28297 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 28236 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 28175 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 28114 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 28053 29 100.0 32 ............................. TTTTCACTGGTTATCGTGACGTCTGCGCGCCC 27992 29 100.0 32 ............................. TTATTGTTTTCATTTTTAAATATTGGATATAT 27931 29 100.0 32 ............................. TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 27870 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 27809 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27748 29 89.7 0 A...........TC............... | A [27721] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 261162-261738 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPIW01000006.1 Salmonella enterica subsp. enterica serovar Newport strain 131174 scaffold6.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261162 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 261223 29 96.6 32 ..................A.......... ACAACAACATATTGGTAAATCAGGATACTGGC 261284 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 261345 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 261406 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 261467 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 261528 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 261589 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 261650 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 261711 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //