Array 1 70039-69010 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIGX01000040.1 Akkermansia glycaniphila strain Pyt scaffold-159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 70038 33 97.0 33 ................................C GGAAAACCGTCACATCAAGCCACACGTCATCCC 69972 33 97.0 33 ................................G CGAGATATGGTTGACAAAGGACGGGAATGCGCC 69906 33 97.0 33 ................................A ACATCAGAAATATCGTGCGAGCATACGATAGCG 69840 33 97.0 34 ................................A ACACAGGCATCATGGAGATGCAGCGTGCGACGAA 69773 33 97.0 34 ................................A CCGATACCCGCGGCCGCCGCTTCGAGTTCGGCCG 69706 33 100.0 33 ................................. CCGATGGTCAGCCAATTGCCCAGTACATCACAA 69640 33 100.0 34 ................................. TGAGGTGCTGACCGCCAGTCGCAAGCTTGTCATG 69573 33 97.0 32 ................................C GATGATGCGGGAAAACGTGTCGGGCGTGGAGG 69508 33 97.0 33 ................................G GGTACTGCACGACATTGCGTATGCCTGCCGACG 69442 33 97.0 33 ................................C CGCTGCCTGTCGCAGCCTCTGCTAGAACGGAAT 69376 33 97.0 33 ................................C CGGTCGGGGAATCCCGCACGTATTCCCGGTCGC 69310 33 100.0 34 ................................. TGAGGTGCTGACCGCCAGTCGCAAGCTTGTCATG 69243 33 100.0 33 ................................. GTTGTCGATGGCTTCTTCGATCATGTCCACGAA 69177 33 97.0 34 ................................A CGGACTCATATCGCAACGGCAGCAACATGGCCAA 69110 33 97.0 33 ................................G ACGGCGAGGATGGCATCCGTGGCGTTGCAGGCT 69044 33 78.8 0 ..........A.....T....C..G...C.G.G | G,A [69018,69024] ========== ====== ====== ====== ================================= ================================== ================== 16 33 96.6 33 GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Left flank : TGTTCGTCATCATCAGCTATGATGTGGCTACGGCCACGAGGACGGGAGCCCGGAGACTGCGGCGCATTGCACGCATCTGTGAAAACTACGGACAGCGCGTGCAGAACTCCGTCTTCGAATGCAAAATCCCGCCGAACCTCTTTGTCTCCGTCAAACAGCAGCTCCTCGATACCATGGACCCGGAAGAAGACAGCCTGCGCTTCTACTTTCTGGGCAAGGATGATGAAGGGAAAATCCTCCATGTCGGAGCCAAGAAAAGCTACGACATCGACGGCACGCTCATCATCTGAAACATCAATCGACCGCAGGCAGGGCGCAACACGCGCGAACCCCAAGCTGTACCGAAATTCCCGGAACATCCGCGAAATCGGCAACAGCCTCGTGTTCATCAGATTGACAAACAAGCCCGCTTTATGAAGTTGTCAAATAATGTATATTGACAGCTCGTCGGCGGAAATAAAGGAATTGCCTCTTTGGTGACAACATGTTACAAAGTGGCA # Right flank : GGGTTGCAGCGGGGTTGCAGCGGGGTTGCGCTTTGTTGGGGTAAGGGCCGTTTACTGAACGTTGTAGATGTTCATGGCGGCTTCGATGCCGTGGGTAGCGGCGTAACGGGCGGCATCCGCCGCCTTTTCGATGGAGACACCGAGGAGTTCCTGTTCGTCAGGGCGGAATTTGCCGAGTACGTGGGCGGTCATTTCCTTGCCGCCGGGGGCTCCTATGCCGATGCGGAGGCGGGGGAATTTGTCTGTGCCCAAGTGGGCGATGAGGGATTTGATGCCGTTGTGTCCTCCGGCAGATCCGCCGGGGCGGAGTTTGAGGGTTCCGACAGGGAAGGCGATGTCGTCGTAGATGACGAGGATTTGTTCGGGGGAGAATTTGAAGTACCGCATGAGGGGGCCGATGCTGGCTCCCGAGTCGTTCATGTAGGTTTGCGGTTTGACGAGGAGGACGCCGGGGCCTGCGGCCAGTTCGGCTTTTCTCGCTTTGTCAAGTTTGTAGGGTA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 41444-40749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIGX01000035.1 Akkermansia glycaniphila strain Pyt scaffold-141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41443 36 100.0 30 .................................... GTGCATGATGGTCATTAGTTTCCGTAGATG 41377 36 100.0 30 .................................... GTATTCCGGTTTGAGGGGCAGGGTTTGTTC 41311 36 100.0 30 .................................... AATAATTCCAGCTATTTACTATGCTAATTA 41245 36 100.0 30 .................................... GTTGAGACTGACAACGTAGCCGCCACTCTT 41179 36 100.0 30 .................................... TGCTTGATGACCATGGGGATGCCGTGGTCT 41113 36 100.0 30 .................................... GTTGAGACTGACAACGTAGCCGCCACTCTT 41047 36 100.0 30 .................................... GTATTCCGGTTTGAGGGGCAGGGTTTGTTC 40981 36 100.0 30 .................................... CCGGCTCGTATCCCTGTACCGAGAGCGATT 40915 36 97.2 30 ................T................... GAATTTCCCTACCTCGTCACCCGCTTTTTG 40849 36 91.7 30 ..............G.T.........G......... ATAAAGAAGGCGACACTGTCTCAATCGCGA 40783 35 91.7 0 .............................T-...T. | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.2 30 ACTGTACCATGCCTTACTTTGGATTCAAGGCAAAAC # Left flank : CCGAAACCTTCTGCCGCGGGAAAACAACAACGATCCGCGCCTCTCTGGAAGCCGTATGCCGAAGCTTCCGGCAGGCGGTGTTGTCTCACCAGTCCGGACCTTATGAACCATGGACAATATCAACTATAAAATGGGCTGGCTCGTAGTCTTCTTCGATCTCCCGACCACCACGCGGGAGGACAAAAAACAGTACATCCAGTTTCGGAAAAACCTGTTGGAAGACGGTTACCTGATGGTGCAATACAGTGTGTATGCACGGGCTTGTGTCACTCAGGAACGAATAGAAACCCATGCCCGGCGCTTGCGTAGCATGGTGCCTCCTGACGGTTCGGTGCGATGCATGTTCGTGACCAATATCCAGTGGGACAAAACCTACATTTTTCACGGAAAGTCGAAGCCTCCACCGGATATCTCCATGCCTGAACAGATGCTTTTGTGGTAGGACTCGTTGCGAGGAAATCTATTTAAGATATTCAATATAAAAGTAAGGCATGGTATCT # Right flank : GCGGATGATATGTTGATAAGATTATTTTCGATGCTCATTTTCAAGAGCATGTTTTGTTGTTATTAACAGGTTGTTACAGCCGTCTTCGAGGAGGCGGATGACGTGGGTGAAGCCTTCGGGGCCGCCGTAGTAGGGGTCGGGGATTTCGCGGTCGGGGTGGTTGCGGAGGTAGCTGCACATGGGCATGATGCGGGCGTGGTGTTCTCCGCTGCCGGCGAGGGCGAGGATGTCGCGGAGGTTGGCGTTGTCCATGGGGACGATGAGGTCGAAGGTTTCAAAGTCGCGGCGGGTGAGCTGGCGGCCGAGGTGGCCGCCCCAGGCGTAGCCTTCGTGTTGGAGGGCGGCGAGCATGCGGCGGTCGGGTTTGTCGCCGATGTGGTAGTCGGAGGTGGCGGCGGAGTCTGCCTGGATTTTGTGTTCGAGTCCGGCTTTGCGGATGAGGCTGTCGAAGACGATTTCGGCGGCGGGGGAGCGGCAGATGTTGCCGAGGCAGACGAAGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGTACCATGCCTTACTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 76811-76439 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIGX01000035.1 Akkermansia glycaniphila strain Pyt scaffold-141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 76810 33 100.0 34 ................................. TCTCCGCAGCCGGGAGAAGAAATCAAAATCACAA 76743 33 100.0 35 ................................. TGAATGTGTTAATGCTTTATTTGAGCAGGCAGAAA 76675 33 100.0 34 ................................. TCCGACCCGCACCCGGAGCCGGGGGTCACGCGCC 76608 33 97.0 35 ........T........................ TTTGAAGACTATGAGTCAGCCGTCGCCTGCGAAAT 76540 33 100.0 36 ................................. AGTTCAGAATTTAACGATCCTACGATGTGGGCGCAC 76471 33 84.8 0 ............................ATTTT | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 97.0 35 GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Left flank : CCGACGCCATGGAGAAAAATGAGGCCACCAAGATCATGGAAACGCGCCGCCTCCGCTTCCACTGCGGTTGCACCATCGACAAAATCCTGCCCACCGTCCGCACGATGAAAAAGGACTTTGCCGACCTCCTGTCGGAACAGGGCAAGCTGGACATCACCTGCCCCCGATGTGCGGCCCAGTATGTTGTGACTGCTGACATGCTGCAGGACGGTCCCGATGAGCGGGAAGAAGAATGAGGCCGCTCGGGTACGATTGAATGCTTGCACCCGGAGCTGTCTCATCGTATGATTTCATGCGTGGCGGCTTCCCTGCTGCCATGCTGCGCGAACCCCAAGCTGTGGCGAAATTCCCGGGAGATCGGCGTATTTTGCAGTTTGCTCAGTATAAGGATGTTGAGAGAATTGGTGCGAAACCTCTTCCGCGAAGTGACGTATCACGGAAGCAGGTTCGCGAAAATGCAAGCATGGACAAGGCTGTATCAGCATGTTATGGTATTGGCA # Right flank : ATTGATAAAACGTTGAAAATAAGTAATTAAGAAAATTACTTGTAATTTTTTTGCAATGCGGAAAAGCGCGCTATGACCGCAAAATCAGTACACGAAAAGCCCCGCCTTTGAGGGGCGGGGCTGGTTGAGGTTAGACTTGCTTCATATCCTGTTCGTAGTCGGCTGGAATATGGTGTGTTTATCAAAAATTAGGATTAATAAACCATTGAATTAGATCGTCTTTTGGATTATTAGCCAACCTTAAGTATGTTGCGGCCTTTTCGAGTGCGTCAAGGCTTGTATGTGCATACACACAGCTGCTTATGTAGGGTGCTCCCTGATCGCTTCTTTGGTAATGATGACTCACGTCGTACCTGTACAGCTGACTTCTTGTATTTAACCATATTTTAATTTCTAACCTTTGAGATCCCATTATAACCCTGTATTGTTCTGCAAGGCTCTCAACATCTTCAAAGATAGTATTATTTACTTCTGTTTTCATTTTATTATATTTTTTCTTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 91484-90374 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIGX01000035.1 Akkermansia glycaniphila strain Pyt scaffold-141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 91483 33 97.0 34 ........................A........ ATCAGCCTTGCCGCCGGTTCCAATATCGTGAAAA 91416 33 97.0 34 ........................A........ ATTGAACATGACGGAAAGCGTCTCCCTGTATCTG 91349 33 97.0 34 ........................A........ AACAGGGGGAAGCAGCAAGCCGCTGAGCGAAGGG 91282 33 97.0 33 ........................A........ TAGATTCCGGGGTGACGCGGGCGGAAGCGATGA 91216 33 97.0 36 ........................A........ TCAAAACAAGAAGTCATTGACATGAAGGCGATGAAC 91147 33 97.0 34 ........................A........ CCTCCCTTACCTCGCCTCCCCGCAGCCTGAAAAT 91080 33 97.0 34 ........................A........ TCCACAATCAGCACCGTGCCGCGTGGGCTATATC 91013 33 97.0 35 ........................A........ TCATCTCGGCTACATCACATGAGGAAATTGGCATG 90945 33 100.0 34 ................................. CGGCGGCGATGGGTTCCGGGTCGCCGGGGATGGT 90878 33 100.0 34 ................................. TGCTGGCCATGCGCATCTCCTGCGTCGAGTAGAT 90811 33 100.0 34 ................................. TTGCCGTCAGATTCCCTCTTCACCCTCGCCGCAT 90744 33 100.0 35 ................................. ATCGGAAGCCCGCCTGTCGTGTCGAATAATAGGGG 90676 33 100.0 34 ................................. CTTCATCCCTGCCCGGCACTCCGCCACGGGCAAG 90609 33 100.0 34 ................................. GCAGGGGATGCCGCTGTCCATATCCGGGTACCAT 90542 33 100.0 34 ................................. TGGCATGCTTCGCCAGCATTTTTTGCTCGATCGG 90475 33 100.0 33 ................................. CCTCCGTTCATGAGGGTGCAGACCGGCGATAAG 90409 33 81.8 0 ..........C...........G...G..TTT. | A,GC [90376,90381] ========== ====== ====== ====== ================================= ==================================== ================== 17 33 97.5 34 GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Left flank : ACAATGAAACGGCGCAGTATGCCTATGACCCTGCGACGGCGACTGGGTGGGAAGTCACTTCCATCCATGCGCTCACTGCACCGCTGAACTTGGCGCCCGAACCGTCCGCCGCCGCTCTGGCTTTGGCGGGATGCCTCGCCGGGATGTGGAGAAGGCAGCGGAGAGTATGAGGCTGAGTCTCCTGCAGCAAGGGGAAAGGACAGTGTGGCAGCTTGTGAAACGGGCGGTATTTTGCGGCGGCTGGGCAGGCGATTGATGGAAAAGACTTGCCCATCGTCGAGACCTGCCCTACAATTCCGAATGTCAGGAATGGCCGCCGTGGCGCGAACCCCAAGCTGTGGCGAAATTCCCGGGAGATCTGCGAAATGCGTGATTCGCTGGGAATCAGAAGATTGAAAGGACTGGCGCGGGTGCAATCGTCTGCTTTTCGGCAGTACGTCAGCAAGTCCGCGCAAATGCAAGCATGGACAAGGCTTTATCAATGTGTTATGGTCTTGGCT # Right flank : TACCTCAGGCCATTTCTTCGTCATGGATGCCGCTTTTCATTTTGCGGCGGAAGAACCATGACAGGGTGATCCATGCTACGGCGGAGGAGATGAGGTCTGCCGTGGCCATGGCGAACCAGATGCCGTTCTGCCCCCAGAAGGTGGGGAGGACGAGCAGCAGAGGCACGAGGAAGATCATCTGGCGGGTGAGCGAGAGGAAGATGGAGATTCGCGCCCTGCCGATGGATTGGAAGAAGTTCCCGATGACGATGGGGGCGCCGATGAGGGGGAAGGCCAGTGCGCTGAGGCGCAACCCGCGTTCGGCGATTTCTTTCAGTTCGGCGTTGTCGGTGAACATGCCGGCGAGCATGTGCGGGAAGAGTTCGCAGGCGAGCCATCCGAAGGTGGTGATGCCGGTGCCGGCGATGATGCCGTAGCGGAGGACCTGCCGCACACGGTCGAGCCGTCCTGCGCCGAGGTTGTAGCCTGCGATGGGTTGCATGCCCTGCGTGAGGCCGATG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCACGGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCCTCACGGAGTGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //