Array 1 958-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALTR01000019.1 Streptococcus agalactiae GB00601 ctg7180000003164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 957 36 100.0 30 .................................... TGCCTTGAACCTTAGAGCCACAAGGGTTTT 891 36 100.0 30 .................................... CTATCGAGAAGAAAAAGCACAAGTACGATA 825 36 100.0 30 .................................... TCATACGCACAATGAGGCTTCAAAAGCTTC 759 36 100.0 30 .................................... ACGTACCCAGCGATATACTACGCAGAATGG 693 36 100.0 30 .................................... GATATGGTGGACAGGTTCAGCAGGTCATGT 627 36 100.0 30 .................................... TATCGCAAATGAAACGGGCGCTTTTGCACT 561 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 495 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 429 36 100.0 30 .................................... GAAACTTCGATTAGTTTGCGTACTCGCTCA 363 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 297 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 231 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 165 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 99 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.4 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : A # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 53-550 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALTR01000009.1 Streptococcus agalactiae GB00601 ctg7180000003154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53 36 97.2 30 .....T.............................. AAATTGTTTTTGTTGTAATATAAAGTCGAC 119 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 185 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 251 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 317 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 383 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 449 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 515 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CTGTTTCGAATGGTTCCAGAAGTTTCGGGAAATGCGACTGATGGTGCAATCAG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 105582-104823 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALTR01000010.1 Streptococcus agalactiae GB00601 ctg7180000003155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 105581 32 100.0 33 ................................ AATATATTTTGGCTGTGTTCTTGCGTAATAATT 105516 32 100.0 33 ................................ CTTTCTTTGTAGCTCCTTCTATTATACCATTTT 105451 32 100.0 33 ................................ AATTTCATCTGTTAGGCTCCTTTTTCGCTTTTG 105386 32 100.0 35 ................................ AATCATAAGCTATCTCAACGCAATCTTTAAGTCGT 105319 32 100.0 34 ................................ AATAAAGTCTGCAAATGTAAAACTTTTTAGAAGT 105253 32 100.0 34 ................................ TTACTGTATTAACTTCTGTACCGTCTGAAAATTG 105187 32 100.0 36 ................................ ATTCAATGAATTTAGGTTCGTGGGATATAGAAAATC 105119 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 105053 32 100.0 36 ................................ ATGTTACCTCCTTTTAAAAAGGTCTATCCTTGCCCC 104985 32 100.0 35 ................................ AAAAGATTATTGCCTTTTTTAATAACACGGCTAAA 104918 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 104853 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.2 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTGAGGAACAGTGCATTTTATGGCGCCCTACGCCCTGTCTTATTTACAATATCTATTTGATGCGACTATAACTCATGCTAGTGGGACTGCGACTTTTCCAAAAGGTCAAAGCGATAGTCAATCCAAACTACTCTTGCAATTATCAAATGGGGTCCTCGTAGATATCTTCTTGACAACACGTTTAAATTTACCGCATGAAATGATTATTTATGGAACTGAAGGTCGTCTAATCATTCCACATTTTTGGAAAACCACTCATGCAAAATTGGTGAGAAATGATACTAGTGCGCAAACGATTCAAGTTGACATGGTTAGTGATTTTGAGAAAGAAGCTTATCATGTTAGTCAAATGATT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //