Array 1 979987-981479 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT795114.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate VNB151-sc-2315230 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979987 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980048 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980109 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980170 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980231 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980292 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980353 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980414 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980475 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980536 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980597 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980658 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980719 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980780 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980841 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980902 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980964 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981025 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981086 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981147 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981208 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981269 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981330 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981391 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981452 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997611-999514 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT795114.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate VNB151-sc-2315230 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 997611 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997672 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997733 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997794 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997855 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997916 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997977 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998039 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998100 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998161 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998222 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998283 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998344 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998405 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998466 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998527 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998588 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998649 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998710 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998771 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998833 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 998894 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [998936] 998936 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 998997 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999058 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999119 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999180 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999241 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999302 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999363 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999424 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999485 29 96.6 0 A............................ | A [999511] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //