Array 1 1164902-1164086 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_018609.1 Riemerella anatipestifer RA-CH-1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
   1164901	    47	 100.0	    29	...............................................	CTATTTTGTTTTTTAAGTGTGAATTGTGC 	
   1164825	    47	 100.0	    30	...............................................	TTCTACAAAGTCTAGCCACGCACCCATAGC	
   1164748	    47	 100.0	    30	...............................................	ATATCACGAAAATTTAAAGTTTAGCGACAC	
   1164671	    47	 100.0	    30	...............................................	AGCCTCTAACTCATACGCACAGGCACAGGC	
   1164594	    47	 100.0	    30	...............................................	CGACAACTTTTTTTGGGTGGCGCCGCCAGA	
   1164517	    47	 100.0	    30	...............................................	TTTCGTACATAAATTACGCCTCGTGCGTGT	
   1164440	    47	 100.0	    30	...............................................	TCTTTATACTAAGAGCATTTAGCAACAATA	
   1164363	    47	 100.0	    30	...............................................	TATTTTCCAAACAGGCGATTTGGCGGGTTA	
   1164286	    47	 100.0	    30	...............................................	TTTATCGCTAAAATTATTAAGGGCAGGAAA	
   1164209	    47	 100.0	    30	...............................................	CCACCAGTAGGGTGGATGAAGAAACTGAGG	
   1164132	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
        11	    47	 100.0	    30	GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC	                              	       

# Left flank :   ATCTTTGTGGTAGTTTGTAGCTTAAATTTATTTTTTATGAAGTTAGATTTTGAGTTCAAAATCAGTTTATGAAAATGAAAAAGGTTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATGAAACAGAAAATTCCCAGTCTGTTATATCCTGAAACAAAGGAGGCTTTGTCCCCCTTACTTCTAAAGGCAAATTTAGAAATATTTTTTCAAATGAAAGAATTTATAAAATTGATTAAAAATATTTTCTCGAAAGAACCATTTGAGCAAGATATAACTATTAGATTTAGTTTATCTTTAGAGCAGATAATATTTATTTTTTAGCTTTAGCAGGAATGATATACATCTTCTTAAAATAATATTATGAAAATAGAAGATATACATACCTCGTGGATACAGGAACAGATAAAAGAGCTAGGTATTAAACGAAAAGACCTAACAAAAGACCTGTTACTAGATAGAAGTTATTTAAGCCATCTGTTTTCTAGTGATGACAAACCGCATA
# Right flank :  CTCAAAAAATAAACCCGTTGTTTTTCAATGGGTTTTGCTTTTTATTAGGATTAGATTTTTCACTATTTCTTGTCTATTTCTACTTTAGTAAATCCTTTTTTCTGTTTCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGGCAATGCCGTATATAAATGGAAAATTGGAAAAGACTAAACCCATCGTCTTCAAGCCGTTTTCGGAATAGCTGAGCCGCTTTACGCATCGCTTTGGTTTCTGTTGGTAAATCATATAACACCATAACCCACATAACTCGATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATAGTTGTCTTTTTTCTCCGGTATAACATTTATAAACAG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-6.30,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [4.5,4.87   Confidence: LOW] 

# Array family : II-C [Matched known repeat from this family],   
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