Array 1 1853498-1851783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028303.1 Acidovorax avenae subsp. avenae strain SH7 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1853497 32 100.0 36 ................................ ACGGTAATAGGCGTAGCTCTTGGTGCTGGCCTCGGC 1853429 32 100.0 37 ................................ GCGAACACTCGCAGCAACGTCCCCGGAGCTGCCCGAT 1853360 32 100.0 38 ................................ GATACCATGGAAGCTCTTGCGAAAAAAGGCGACCGTAT 1853290 32 100.0 36 ................................ GGCGCGGTTTTGATGTGGCCCGCGATCCGCGATGAC 1853222 32 100.0 36 ................................ CGCCGCGGCCATCCGGCATTTGCATGGTCGTCACGC 1853154 32 100.0 35 ................................ TTGTTGGTCTGCACGCCTTTGTACGTACCTAGCTC 1853087 32 100.0 37 ................................ AAAGGGGTGACGGCCGCGGATCTGAGGGCATCCGGCG 1853018 32 100.0 34 ................................ CCGAATGCTGACCGGGTGAAGGCCGATGTCGAAG 1852952 32 100.0 34 ................................ ACGCCAGCCACAGCGGTAGCCGAAGCGCCAGCGC 1852886 32 100.0 36 ................................ TGTCGCTTGGCACCCAATCGGATGGCGCGCCGCCTG 1852818 32 100.0 34 ................................ GCAGTGGGAACGAACTACGTACCGCGCGACATGC 1852752 32 100.0 35 ................................ ATGGTGTGGGGCCGGCAGCACCGGCAGCAGTAGGC 1852685 32 100.0 34 ................................ CAGTACCTGGGCCGCATGCAGCTCCTGCGTCGCC 1852619 32 100.0 35 ................................ CACGCCGGTGCGCGGGCGAGCGCTGGGCACGCAGG 1852552 32 100.0 35 ................................ GTCGTCGGAGGCATCGGGCCGCAGGCCGCCGCGCT 1852485 32 100.0 36 ................................ GTCACCGACGTGATCGCCGATCCGGGGGCGTGTGAG 1852417 32 100.0 36 ................................ GACATCGACAGCATCGTGGTGCTGATGGCCGTCAAC 1852349 32 100.0 35 ................................ ACTCTGCGGGCGTTTGGTGATGCTGGATGCAGAGG 1852282 32 100.0 36 ................................ CTGCCGCTCGGGGTCGGGAATCTCCAGCCATGCGCG 1852214 32 100.0 36 ................................ GAGCAGGGGCGGCGCGAGAGCATCGCTACCACGGTC 1852146 32 100.0 33 ................................ ATCGCCGCGGGTCGCCATCACCTGCCAGAACGC 1852081 32 100.0 34 ................................ GAGCCCGGCGCCGGCTGAGTGACACGATGCACAG 1852015 32 100.0 34 ................................ CTACGGATCGTTGCCCTTCGCCGAACAGGCGGAG 1851949 32 100.0 37 ................................ GACCTGTGCCAGCAGCTCGACGTGCGCGGCTTCGGCC 1851880 32 100.0 34 ................................ ACGACGATGGCCGACACGCTGTTGTTGCCGTACA 1851814 32 96.9 0 ..........................C..... | ========== ====== ====== ====== ================================ ====================================== ================== 26 32 99.9 35 GTCGCGCCTCGCGTGGGCGCGTGGATTGAAAC # Left flank : GTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATTTTCCGCGTCAGCAACCGCACCGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGCGGCCATGGTGCGATTACGAGCCGAAGACGCCAGCGCCCTGAGGGCGATGTCAGGAACGGTACCGTTCGTCGCGTTCTTTGCCGCTCCCGCCGCCGCCGCGAACCGCAAGTGACCGGCGCGGCGCTCTGAGGTTCGCGCGGGTGCAAGTGGTTGAGCGGGAAGGGCTTTCCTCTGCGTGAGGGATCGCGGCAGGCTTTCTTTCCATCAGCGGCCCGCGGTTCGCGGAAAGGTGCGAAAAATTGCTGAGGAGACGGGGCGTTATAAATATGCC # Right flank : GCCCGTGAATCCGTGCGGGTGAACTTTACCGTGATCGTCGAACCCGACAAGAGCACGCTGCCCGTTGAGATGCAATTGCTGAAACGCGTGCCCGCCGAATACGCAGTGGAATCGCGCCACTGGCTTATCCTGCTCGGCCGCTACGTGTGCCACGCAAGAAGCCGCGTTGCTGGGAATGCGTGGTGCGATTACGAACCGAAGACGCACGCGCCTTGAAGAATAATATTTCCGTTTCGCTAGGGAAGGTCTGCACAACACGCATGATTGTGCAGATGCGATGAACCTGTTGATGTGTATGGCGCTCCGGGCCCGTTTCGCTTCAGTTCAGGTGAATGCGGCGTAGATTGGCCGCCGACTTGGCCTGTCTGGCTAACTGCGGACGCACTCATGCCAAGGCAGCCAGCAATTTGCGCCGCGCCAGCCACAGATTGACCAACGCAAACAGCGTGTGCAACTGCGCGGTGTTCTTGGCCAGCCCTCGGTAGCGCACCTTGGCATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //