Array 1 260916-261858 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQR01000003.1 Salmonella enterica strain BCW_3998 NODE_3_length_262034_cov_4.00308, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260916 29 100.0 32 ............................. AGCACTTCACCGGATCGCTGGTTGTGCCGGTG 260977 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 261038 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 261099 29 100.0 32 ............................. ACGTTTTAACAGGGTAATATTTACTTAATTAT 261160 29 100.0 32 ............................. GTTACTTTATTATCTCTCGCATAGACCCGGCA 261221 29 100.0 32 ............................. AATATCTATAACGGAGCCGTTTTCATTGAGCG 261282 29 100.0 32 ............................. TGGATATTCATTGAGCGCTGGAAATTCAAAAA 261343 29 100.0 32 ............................. ACAACAACATATTGGTAAATCAGGATACTGGC 261404 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 261465 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 261526 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 261587 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 261648 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 261709 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 261770 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 261831 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16250-17743 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXQR01000031.1 Salmonella enterica strain BCW_3998 NODE_31_length_45235_cov_3.84472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16250 29 100.0 32 ............................. CGAGCGCCGGAGTTGATTAGTGGTGCCGGGGA 16311 29 100.0 32 ............................. TAGCCGCGGCTCACCGTCTTTCGGTTCAGGCC 16372 29 100.0 32 ............................. CGGGCCGTCTTTCAGCGTCTTCCACTCGCCGC 16433 29 100.0 32 ............................. CGTTATAAGGCGGTAACAGCGAAAACGTATGA 16494 29 100.0 32 ............................. GCTCCCGACTCCTGAATGAAGGTGTCGATTAT 16555 29 100.0 32 ............................. ATCTGGAATTGTTGACGGTGGCTGATTTAGCA 16616 29 100.0 32 ............................. TCGCCTTTTCCAGTCGCCTGCACGCTATATCA 16677 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 16738 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 16799 29 100.0 32 ............................. GTTCAATTCGGTTTCCACTTCCCGCTACATCG 16860 29 100.0 32 ............................. ATTATCTCTCACTTGCTTCAATAAGCCCCCGC 16921 29 100.0 32 ............................. GCGTTGTTGTTATTCGCCAGACCAAGATTCCA 16982 29 100.0 32 ............................. TTGGCGTGCGGCGAGGTCATCAGATAAAGCGC 17043 29 100.0 32 ............................. TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 17104 29 100.0 32 ............................. CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 17165 29 96.6 32 .G........................... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 17226 29 96.6 32 .............C............... TACCTGCCGCTACCGCGCTGGACTGCGCCGCC 17287 29 96.6 32 .............C............... TGTAATCTCTCTATTTATAATCTGTATTGTAC 17348 29 93.1 32 .............C..G............ CAACTGGTGATACGGTTATGTCTCGTATCGCA 17409 29 96.6 32 .............C............... GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 17470 29 96.6 32 .............C............... AGTAATCAACTCAATGCGCTCACAACGCAATG 17531 29 96.6 32 .............C............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 17592 29 93.1 32 ............TC............... TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 17653 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 17714 29 89.7 0 A...........TC............... | A [17740] ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //