Array 1 242919-244045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGJW01000006.1 Escherichia coli strain GZC09-12 NODE_6_length_261041_cov_146.036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 242919 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 242980 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 243041 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 243102 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 243163 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 243224 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 243285 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 243346 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 243407 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 243468 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 243529 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 243590 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 243651 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 243712 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 243773 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 243834 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 243895 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 243956 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 244017 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8963-10395 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGJW01000014.1 Escherichia coli strain GZC09-12 NODE_14_length_135457_cov_133.573, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8963 29 100.0 32 ............................. CAACTGGCGGAATACAGGACGGGTGGATATTC 9024 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 9085 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCGTGGGGAAAAGC 9146 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 9207 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 9268 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 9329 29 100.0 32 ............................. CGTGGAGGAGAGGGCGACGCGCTGGCAGACAC 9390 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 9451 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 9512 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 9573 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGTGGGCT 9634 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 9695 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 9756 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 9818 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 9879 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 9940 29 96.6 32 ............T................ CAATTCATAAATTAATTTACTATTTTGAGTGC 10001 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 10062 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 10123 29 100.0 32 ............................. GCAATGCTCGTACGCCGTCTCACTCCGCGTGA 10184 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 10245 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 10306 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 10367 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //