Array 1 303649-302647 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIOO01000002.1 Klebsiella sp. G2-16S-Nf13 NODE_2_length_512610_cov_37.2632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 303648 28 100.0 33 ............................ CAACGAACCAGCTTAAATTCGCACATAGCACCT 303587 28 100.0 33 ............................ TCTACCTGTCAATCCTGCAATCCTGCCGGGGGG 303526 28 100.0 33 ............................ TAAAATCGCCGGGTGGGAGGACTGCCGCACCGT 303465 28 100.0 33 ............................ TTTAATTACATCAATGCCGGCTAGTGTAATCTC 303404 28 100.0 33 ............................ CAGATGGTCCCTGGACAGCCCTTCCAGTGCTGG 303343 28 100.0 33 ............................ CATCCGGCGCCTTAACGAGCACTACCGATCCTA 303282 28 100.0 33 ............................ TCCGGAGAACGCAAAAGCGGGCAAGGCGATTGG 303221 28 100.0 33 ............................ TGAAGTAGCCTTTTTATTATTCCTGAACAATCC 303160 28 100.0 33 ............................ CGTGCCGGTGAGCACGTCGCCAATGCGCCCCAT 303099 28 100.0 33 ............................ CGTATCACGACTGCCTGGTGAACCTGCTGGATA 303038 28 100.0 33 ............................ CCACTACGTTTGTGGCTCCATCATGCAGCAGAT 302977 28 100.0 33 ............................ CTTTGTCGGCGGCGGCGGGGCCAGTACCGGGAT 302916 27 85.7 33 ...............-......G.GG.. TACGTAGAGATAAACCCGGCCCTCTTTATCGTG 302856 28 96.4 33 ..............T............. CGGGGCTCACCTGCGTAGTTGTTGGCCGTCAGC 302795 27 89.3 33 .........G....T......-...... CATGATTACCTCGTATCAGAGCGGCCGCTATCT 302735 28 96.4 33 ..............T............. TCTCTTGATACTGACTCGGTGCCCGAGCGAGAC 302674 28 71.4 0 ..............T.....AC.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.4 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGAGCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGATGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAACAATAACGGCGAATGATTATTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGCCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACTCCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGACTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 312613-312402 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIOO01000002.1 Klebsiella sp. G2-16S-Nf13 NODE_2_length_512610_cov_37.2632, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 312612 28 100.0 33 ............................ TCGAAGAAGTCGAGTCTGGTGCATTTGATGGCG 312551 28 100.0 33 ............................ TGAGGGGATACAGAAAGAAAAACTACCCTTTCC 312490 28 100.0 33 ............................ CTTTCAGCAACAAGCGGCTATCGTTCGGATTGA 312429 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTACGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCAGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGAGGCGGGCAGGCAAGTAGGGTATATCGGTTTTGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAAGGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGGAAGGGGATTCCTGACGTAAAGGCATCAATGCCGTGACATAGTTATCCTTAATGTAGATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATATTTTTTATATGATTTTACTTATAAATATTCGTGAACTATGTTTGTTCTATACTTTCTTTAGGGACATCTAAATCGTTCGAGTTTCTTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAATTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGCGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAATTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTACAAAATCAACATGCCATAGCGGCGATAAGTTTTGAGAACTGCCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //