Array 1 347934-350216 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBW01000004.1 Listeria monocytogenes strain ICDC_LM0484 LM0484Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 347934 36 100.0 30 .................................... AGCTGTAGGTGCGGCAATTGGAGGTATTGC 348000 36 100.0 30 .................................... ATTTATCTTCCGCATCTCTACGTGCTTTTA 348066 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 348132 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 348198 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 348264 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 348330 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 348396 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 348462 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 348528 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348594 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348660 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 348726 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 348792 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 348858 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 348924 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 348990 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 349056 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349122 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349188 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349254 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349320 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349386 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349452 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349518 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349584 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 349650 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 349716 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 349782 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 349848 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 349914 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 349980 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 350046 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350112 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350178 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350203,350209,350212] ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //