Array 1 228736-228516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCF010000002.1 Clostridium botulinum strain DFPST009 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 228735 29 100.0 34 ............................. CTAAATAGTCTGGAACAACAATATAATGAATTAA 228672 29 100.0 35 ............................. TTCCTTATTGATTCAAAGATGCTTCTTTGTTTCTG 228608 29 96.6 35 ....G........................ CAAACAAAAACATTTAAGGAATGTTTTCTAACAAA 228544 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 98.3 35 ATTTAAATACATCTCATGTTAATGTTCAA # Left flank : AGTTTCTATTTTATCTATAAATTCTTTACTTAATCCCCTAATATTAAAAATATACAACCTATCTTTTTTATAAAATTTATCTCTTTCTATAGGATAAAAACTATTAAACACATAATTTTTATACTGTTTCTTTGGATGTATTTTTTTTAAATCGTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATGTCTTTTTTTAACATTACTGTTGCAATCAGTTCCCAAAATTCCATTTATACACCTCTTTATACAAATTTATCTATATTATACCATACACCCTTTAGTTAATATAACTGATTATTCTACTTATATTTTAAAAATATTATTATTTTTATTAATAATAAGTTAATTACTCATCATATTCCATTCTAAAACTTCGCATAAAATAAAAGCCTTAGATTATTCTAAGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAATAC # Right flank : CCATAGTAAAATAGCCATTCCTTATTTTTAAGAATATCATACAACCATTAATTTCACAAGATTTTAAAGAAAGTTTTCCAAGTAGTTTTGCTTTTTTACAAATATAAAATAAAAACCTACCATAAGCCTTATATGTCAACGCTCAAAATAGGTTTTAAAATTTATTTTGGCTGGAAAAATTCAGTTAGTAGAACTCCTTCTCGCTTCCTCAAATGAGTAAGTACCTCACACTAAATCTCAGATTTATATTTACTACTTAAATACATCTAACTTTACAATATAATTGGATTGCCCAATAAAAAATCGCAAATTCAATCTCTTGAATAATGCGATTTTTTACGTTTATTATTATAGTAAAATAGTTCCCTTTGCCAAAATAGCTACCTCTCCAGACACTAGTATTTCTTTTTCAGAAATGCTCATAGAAACCTTAATTTTACTAGGTCTGCCGACAAATCTTCCTTGATTTATTATAATCTCATGACCTACATTAAAAATAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 752246-752880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCF010000001.1 Clostridium botulinum strain DFPST009 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 752246 28 96.4 37 ..............T............. ATTGGTTGTAAATACCTAATTTATTCCCAGAAGATAC 752311 28 100.0 38 ............................ GCATTAAATAAAACTATAAAAGAAGCAACAAAAATAAA 752377 28 100.0 37 ............................ GCTTTGATGAAAAGCAACTATACAAATGTAAACATAC 752442 28 100.0 40 ............................ GCGTATTTAATTAAATTAATTACCTATAAATGGATAATTC 752510 28 96.4 39 ..............T............. ACGTCTCTCCCAACAAAAGCACATAGCTTTAGTTAAGTC 752577 28 96.4 36 .....................G...... ATAGAATATTTAATATCCGAATATAAAGAAAACAAA 752641 28 85.7 118 ............A.T..A.....A.... GTAGTTTTCATACCATACATAAGCTTAAAACATTAAATATCTAATTATTTAATGAAACTCCTTCTCGTTCCCTCGAACGAGTAAGCGACTCACACCAAATCACAGATTTGGGTTCCCT 752787 28 89.3 38 GC.................C........ ACGTGAAAAATAATGTTGGATAATACAGCGAAAATAAG 752853 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 9 28 96.0 48 ATTTAAATACATCTCATGTTAATGTTCA # Left flank : CTGAAATAGAAGAACATCAAAAGAAATATTCAGAGGAAGTAAAAAATAAATATGAAAACACCTCTGCTTATAAGGAAAGTAATGAAAAAACTTCTAAATATACAAAAGAAGATTGGAATAATATAATGAAAGATTGGGATATTATTTATAAAAAACTAGCAAATCTTATGGACAAAAATCCAGATGATGAGGAAGTTCAAGAATATATTCACCAATTTAGGGAGCATATTTCAAAAAACTTTTATGATTGTACCCCTGAAATATTTAGGGGTCTTGGGGAACTTTATGTTAATGATGAAAGATTTACGAATAATATAGATAAATATACAGTTGGTCTTTCTAAATTTTTAAGGGAAGCTATTAATGTTTATTGTGACAATATAAAATAATAATTATATGCTATTTTAAATATTATCTAAAATAGCTAGTATTTATTACACAAAAATAAGGTGATTCAAAATAGATTTAATTTATTTTGAATCACCTTATTCTACATGCTG # Right flank : AATCATAGTAAAATAGCCATTTCTCAATTCTAAGAATAGCATATAGCCTTTAATTTTACAAGGTTTCAAAGAAATTTTTCCAACCGTTTGTCATTTTTTATAAAGACATAGATAAAGCTTATCTTAAGGCTTATATTTCAATACCTAGAATAGAATTTAAAATTAAATGTGGTTGGAAAATTCTTTTACTTATAATTAGATTAATTAGTTACTAAAATTAATTTTATTTTATTTTTAAAGGTATTCCACAGGTTACTAAATAAACCTCATCACTCAAAGAAGCTATAAATTTATTTATAATACCTTGAAAGTCTCTAAATATCCTACCTAATTTATAGGCTGGAACAATGCTATAACCTACTTCATTAGTAACTAATATTATGTTTTTATTTTCTTCTTTTACTGATATTATTAGATCATAAAACTCTTTTTTTATCCCCTCTAAAATTTCATCTAATTGTTCTTCTTTAATATTTTCATAATCTATTTTTTTATGAAAC # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.99, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCA # Alternate repeat : ATTTAAATACATCTTATGTTAATGTTCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //