Array 1 4865-3935 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQL01000006.1 Pectobacterium carotovorum strain BF45 PC_Bf45_s104-s14744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4864 28 100.0 33 ............................ CGTTTGGCATTTTTTCGTAAATAAGCTCTAACG 4803 28 100.0 32 ............................ ATATAAGCATAGAAAACGGCAATCACCATATA 4743 28 100.0 32 ............................ TCGGCAATGACACGACTATCCAGCTCGACCTT 4683 28 100.0 32 ............................ TGACCAGCGTTTGCCCTGCGTCAGCCAGCTTG 4623 28 100.0 32 ............................ TGACCAGCGTTTGCCCTGCGTCAGCCAGCTTG 4563 28 100.0 32 ............................ TATACGGACGCCGAAGCCATCTTGCGGCCGGA 4503 28 100.0 32 ............................ TCCCAGCCTTGCAGCAGCGCTTTAGCTGACAC 4443 28 100.0 32 ............................ GAAGTCGATAGCCTGATTGGTAATGTTTACGT 4383 28 100.0 32 ............................ CAAGAGCAAGCCGAACAAGCTGGACTCCAACC 4323 28 100.0 32 ............................ ATGAAACTTGATAAGGTCAGGAACAGACGTAA 4263 28 100.0 32 ............................ ATATCGTACGGCTCTTTGCCTGGTCGCCGCGC 4203 28 100.0 32 ............................ AGCGCTGCGAAGTCGTCGAGCTGTTGCCGCTT 4143 28 100.0 32 ............................ ATAATTGGTGGTATTGGACGGATATGATGGTA 4083 28 92.9 33 ...........GT............... ATGCGTCGGCGTATCTAAGTTCTCAGTCAAAGC 4022 28 96.4 32 ...........C................ TAGGACCTATTGACTCTTAATCAATTGGTCGC 3962 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCACAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAACGCTCCCAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGGTGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32282-31775 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQL01000029.1 Pectobacterium carotovorum strain BF45 PC_Bf45_s125-s43117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32281 28 100.0 32 ............................ TCGGGCCCCGCACGCTCCAGATGCGGGGGATC 32221 28 96.4 32 .................T.......... ATATCAGCAATGAACGATGCTGCAAACGATTT 32161 28 96.4 32 ...........C................ CGCGCTAATAGCATTGCCGCTAATATCACTGT 32101 28 96.4 32 ...T........................ CTTGTTTCTTTTACAGTATGTGAAAGGTAATT 32041 28 100.0 32 ............................ AAAGTAGTCGGTGGTCGCCAAGTCATCATCGC 31981 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 31921 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 31861 28 92.9 32 .......A.........T.......... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 31801 27 75.0 0 ............GC......-..C.GCG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 94.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACGG # Right flank : ATTATCGGGATGCGTCGCTGGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTATTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAATACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCATCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATTGCCGCCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGG # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40906-41578 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQL01000029.1 Pectobacterium carotovorum strain BF45 PC_Bf45_s125-s43117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================ ================== 40906 28 100.0 32 ............................ GTTACGGCCAGCGGTGATAAGCCTGGTATCCA 40966 28 100.0 32 ............................ AGTACCCGCAGACGTGCAGCAATACGCTGCAA 41026 28 100.0 32 ............................ AAACATCCCAACCTCCATTTATTCATCTTAGC 41086 28 100.0 32 ............................ AGAACACGACACTCGCGAGCTATTCACCGCGC 41146 28 100.0 33 ............................ GTGCAGAACGTCAGCGCCCCCGCGTTCCTGCAT 41207 28 100.0 32 ............................ GCGTTCTGTTTGGCAAAAGGGCAAAGCGGAAC 41267 28 96.4 76 .............C.............. CTCGACCTGCGCGGCACTGGCATCATCAGTAGGCAGCTTAGAAACATTCGAGGTGCTGTTCGTACGAAAGCTCAAT 41371 28 92.9 32 .C.........G................ TGATGAGGATCGGCTCGCTAAAATCGGATATG 41431 28 92.9 32 ...............A.T.......... AAGCCAAGAGCAACAACTCGCCAATGATCCAC 41491 28 96.4 32 ....................T....... CAGGGAAAACGTCACGGAATCAATCAGCCCAA 41551 28 78.6 0 .............C......T...TCCG | ========== ====== ====== ====== ============================ ============================================================================ ================== 11 28 96.1 37 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACAGAGGTGCCGGTCCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCCAAAGGCGTTATCCATAATATATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCATTAGAGTGATCGGGCTACA # Right flank : GCGACATTAAGTGCTGCTGTCTGGCTATTATCGAGGTAGCGCTATCGGCAGAGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAATTGCGTATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGAGGCTGTGAAATACGATCTGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //