Array 1 62550-63493 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGS01000033.1 Escherichia coli strain MF6 MF6_BDMS190049475-1a_1.clean_(paired)_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62550 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 62611 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 62672 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 62733 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 62794 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 62855 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 62916 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 62977 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 63038 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 63099 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 63160 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 63221 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 63282 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 63343 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 63404 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 63465 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89193-91050 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJGS01000033.1 Escherichia coli strain MF6 MF6_BDMS190049475-1a_1.clean_(paired)_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 89193 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 89254 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 89315 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 89376 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 89437 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 89498 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 89559 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 89620 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 89681 29 96.6 92 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCCGTGTTCCCCGCGTCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 89802 29 82.8 32 NNNNN........................ ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 89863 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 89924 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 89985 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 90046 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 90107 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 90168 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 90229 29 100.0 32 ............................. CAGACCCAGCGTGCCGCTCAGCGCCCGCGAGC 90290 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 90351 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 90412 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 90473 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 90534 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 90595 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 90656 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 90717 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 90778 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 90839 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 90900 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 90961 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 91022 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 30 29 97.8 34 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //