Array 1 139599-137069 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDYD01000006.1 Corynebacterium pilosum strain CIP103422 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139598 29 96.6 32 ............................T GGGTAGAGACCGCGCTCAATAAATACGCCCGG 139537 29 96.6 32 ............................T CCCACGACACGCACGACAATAAACCACATTAT 139476 29 96.6 32 ............................T TTGGTTTCGGAGGTCGAGGACCTGGCGGGCGA 139415 29 100.0 32 ............................. CACCCGCTTGCCACCACGCACAAGGCACAACA 139354 29 100.0 32 ............................. TCGGCTATCTGTGTCCATTCCACGTTCACGGG 139293 29 96.6 32 ............................G TCCTGCCACTCCAGAGGGTGGAGGAAGCCGCC 139232 29 96.6 32 ............................G GGTTTTCATTGTGGTGTGTTCCTTTCGTGGTG 139171 29 96.6 32 ............................G TCCGTAGGTACGGTGAGGTGCAGCCTCGCCCT 139110 29 100.0 32 ............................. ACACCATCGTCATCAACCACCACACATGATTC 139049 29 96.6 33 ............................T GGCAAAACGGTGAGAGCCGGGGTGAGGGGGTCA 138987 29 100.0 32 ............................. AAATCCGAGGTGTGGGACGCGAACAAGGACCC 138926 29 100.0 32 ............................. CCATTTCGCAGGCCCCTCACGGGTATCAGCCT 138865 29 100.0 32 ............................. ACGTACGAAGAAGACGAAGTTGCAGCCATCGT 138804 29 100.0 32 ............................. CATCGGCCTGGTCATGCAGGACGTGGCCGAAA 138743 29 96.6 32 ............................T ACAACGGACGTCCACAGGCGCTTTGGGCTTCG 138682 29 100.0 32 ............................. GCACCCGAGTAGGACAACCCGTGCAAAACGGA 138621 29 100.0 32 ............................. ATCATCGGGTTCGACACCAACCACTTCGGCGA 138560 29 100.0 32 ............................. CAAGGCGACCGCATCGCCCAAATCGTGTTCAC 138499 29 100.0 32 ............................. CGGATTGTCACCGAAATGAACCAGGACTTCAC 138438 29 100.0 32 ............................. CTGGCTGCTCCTTTTTCAACCGCCGAAGCTCC 138377 29 96.6 32 ............................G TAGATGTCGTAGGTGGAGAAACCATGGCTTTC 138316 29 96.6 33 ............................A GGCCGGGATGAAGATGGGGAGTTTGAAGAATCG 138254 29 100.0 32 ............................. CTCGGCCAAGGACGACCAGGTGGCCGGATCAG 138193 29 100.0 32 ............................. CCGAAACCATCACCCACCGACGACGCCCGAAC 138132 29 96.6 32 ............................G ACCATTGAGCAGTCGAAAATTGGGCCGCTGAT 138071 29 96.6 32 ............................G TCCTCGATTGGGCGTACCGCTACCAGCGATCC 138010 29 96.6 32 ............................G GCTCGTCTGGCGTATGCAATGAGTCTGATCGA 137949 29 96.6 32 ............................T AGCTTCGCCCCGCCACCGCCACCGCATCATGC 137888 29 96.6 32 ............................G TGACTGGCAGATCACCGGAGACATTGCCGAAG 137827 29 96.6 32 ............................G CGTCACCCACGAACCGGAATGAGTAAGTGAGA 137766 29 96.6 31 ............................T TGGGTGTTAGGCGCTTACAGCCGAGCCTATG 137706 29 96.6 31 ............................T TCACCTGGCACAACAACTAACCCACAAGGGA 137646 29 96.6 32 .......................A..... TCGGCAACATTCTCAACATCATCCTCAAGATA 137585 29 100.0 32 ............................. ACACGCTGAGCACCAGCCCACGCCTGCGTGGT 137524 29 100.0 32 ............................. CGAAATATTCACACCCGCAAGCCGCGCCGTCT 137463 29 100.0 32 ............................. ACAGAATCTTTCCTCTTCATGCACTACCGCCA 137402 29 100.0 32 ............................. CACTTCGGCGACAGCGAAGCTCGCTGGCCGAT 137341 29 96.6 32 ............................G CCATTGCGCATATACTGGTAAATGTAAGCAAG 137280 29 100.0 32 ............................. GTGTCGGTGGATTTGTGGCTGCCTGGTGATGA 137219 29 100.0 32 ............................. CCGTGAACGTTAACCTGCCAGAACCCCACATG 137158 29 96.6 31 ............................T AATCAGGCTATCGAGCTTTGCCTTAGCGTTA 137098 29 89.7 0 ......................C.G...T | A [137072] ========== ====== ====== ====== ============================= ================================= ================== 42 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Left flank : ATTTGTACTCTGACGTGGATCTAATCCTGTGGAGCGAGCTTGAAGTCATAGCAGCCGGCGTTAATTGGGGCGCTGATCAGCATTGATCGTGCTCATCGTAACAGCATGTCCCGCCGGCTTGAGGGGAGACCTGACGAAGTGGCTTATGGAACTCAGCCAGGAGTTTTCGTTGGACGACCTTCAGCCAGGATTCGAGATTTGTTGTGGGAAAGAACAGTCGAATTGTGCCGTGATGGACGAGCTATTCTAGTTTTCTCGTCGGATAACGAACAAGGAATGGAGTTCCGCACACATCGTCACGATTGGGAACCGACAGATTTCGATGGAGTGACACTGATGGTGCGTTCTACTAAGAAACGTTCAGATGCGGCAAGCGGAAGCGGGCGTCGTACGGGGTGGGCTAGTGCGCGATTCCGTCGACGATGACTGAGACGTCCGAGAATTATTTTGAAGTTGAGTGTAAACTAGCATCCTGCTCCCAAAAGCCCTGTTCATTAAGG # Right flank : CGTATCCACTTACCTCTCGGCGTTAACCGCGTGATGCCACATGAGTTTCAACTGGCAACCCGCAATATAAACGCGGAGGGGTACGTACAGCGGCACGCATCGCGGGCCGACGAGAAAAGGCGACTAGCGCAGCGGGTCGAAAGGACGCAAGACCGGATCCACCTCGCCGGTAGCGATCTGCTTGGCCAGCAGCTTGCCGGATAGTGGGCCCAGAACGATACCCCACATACCGTGGCCGCCACACGTGTACACGTTCGGCGCCTTCGTCTCGCCGACCAGTGGCAGGCCGTCCGGGGTGACGGGGCGTGAGCCGACCCATTCGTCCTGGATGTCGGTCCAGTCGATGCCTTGGAACATCGGCTTGGTCACCTCGATGATGGATTCCACACGCGCTGGCTGGAAAGCCTCGTCGGGGCCACGGAACTCCATGGTGCCGGCGATCTGGAAGCGACCAACACGCGTCGGCGCAGGTGTGCACGCCACGCGAGTATGTGGCAGGT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //