Array 1 273611-274798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYBZ01000001.1 Escherichia coli strain 504005_aEPEC, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 273611 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 273672 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 273733 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 273794 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 273855 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 273916 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 273977 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 274038 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 274099 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 274160 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 274221 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 274282 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 274343 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 274404 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 274465 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 274526 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 274587 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 274648 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 274709 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 274770 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 300497-301439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYBZ01000001.1 Escherichia coli strain 504005_aEPEC, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 300497 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 300558 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 300619 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 300680 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 300741 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 300802 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 300863 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 300924 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 300985 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 301046 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 301107 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 301167 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 301228 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 301289 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 301350 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 301411 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //