Array 1 64664-65011 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHW01000014.1 Megamonas hypermegale DSM 1672 G550DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 64664 26 100.0 40 .......................... ACTTAGTTGTTCCTAAAATAGAAACAGAAAAAATTACTGC 64730 26 100.0 40 .......................... ACTTTAATATAGCGCTTCTTATTTTTACGCTCTCTATTAA 64796 26 100.0 38 .......................... ACTTTTAGATATAGAAAAGCAGGATATGGATTTAACGA 64860 26 100.0 38 .......................... GCTAAGGCAAACAAACATATTAAGACACATAAAGTCTT 64924 26 96.2 36 ........................G. CTTCTATTTTATCTTGATACTTTAATTGTGGCTTTA 64986 26 76.9 0 ......T.....T.......AA.G.G | ========== ====== ====== ====== ========================== ======================================== ================== 6 26 95.5 39 GTTAAGCATTAACATTGTACGGTCTC # Left flank : CAGAATTTATAGCAGGGAAAAAAGCATTGAATAATGCTGGTGAAAAAATGGGAGATTATATTGTAGAAAAGCTTTTAAATTATGGTAGTGGGAATAAACAAAATATAGAACTAAAAGTTATAACCACTGATTATAATAAAGTGAATATGGTAAATAATGCTTTACAAAATATTCGAGGAGTAAATTCAGCAAGGGTAAATAGTTATGATGAAGGTACAGCAACTATTGATATAAAATATTCAGGAACACCACAGAATATTTATAATCAGTTAATTCAAAATATAAATTGCAATCTTAAACTGCAACAAATTACGTATAATACTTTAACGATAGTAGTATATTAAGTTTTATTTGCCAGCCGAAAAAGTAAAAAACCTATAATATCAAGCATTAAAAAAGATAGACATAAAACTGAAATCGGCTGGTAAGATTTCTATTAAAGATTGAAAAATAAGGATATATAAGCTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : GATTTGGGTTGTAGAATTATGCTAAATGTATTTATGATGAATTATTGATTAATATTAACAAGTGATGCTTAGCAGTAAAATGAAAGAAGACATAACTTAGATTAAAGTTATGTCTTTTTTTTATAAAAATTTTTAAAAACCGTGCCGAATTTTGGAAAAAGTAGGTGATATATAAAATAGAGACTAAAGAGGGTGATGAAAAAAAAATAAATATTTAAAGGTAAACTAAAATTTTGTGATTAAGATTGGAGTTAGTATTATGAAAAACAAAGCAAATGAAATCAAAACAAAAATTTGTATTCCAAAGGGATTTTTTGGCGGAAATTGCTCAGGTTGTCGGTATTGGGAAGAATACAATAGAGACTCAAGTGGCAGAGCATTTTGTAGTTATTATGATGATTGGTATTATCCATCAGAAAGACGAGGTTGCTTTGCTCGGAAGGAATAAAAGAAGATGAGTTTTTGCCAGCCGAAAAAGTAAAAAGCCTATAATATTAAAT # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 5865-6093 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHW01000021.1 Megamonas hypermegale DSM 1672 G550DRAFT_scaffold00019.19_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 5865 31 100.0 35 ............................... TCAAATACAAATAATCCTAATTTTACATTACAATT 5931 31 100.0 36 ............................... AATACAAGACTTAACATTTAAAAGCGTCGGTAACGG 5998 31 93.5 35 ...........................CA.. ACGTAGAATGAATTACGTTTTTTTCTCGCTTTTCG 6064 30 87.1 0 .......C....T.............-.C.. | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 95.2 36 GTTAAGCATTAACATTGTACGGTCTCTTGTT # Left flank : TTAAATAAAAAAATTAATTTAACAGATGCTCCTAGAGATTTACGATGCTTTGTGGATTTTAAAATCTTATTAGAACGATATTTCTTTTGTGGCCATAAATGGGCAAAACCTAAAATAATTGTTTTTAAAGAGCCTGAAAGTTATTTAAATGATACTTGGCAGGATTTATATGCTGAATTTGTTGTTTTATTGCAAAAATATATAATTCCTAATTTGATTATAAGAACAGAAAATAAAGATTTAATGGCTAAAATAAAACATTACATCAAAATTCATGATAGTATAGCAAAGGTTAACGTATATGAAGCCGTGAAAAATAATGATGGCTTTAATCTAAATAAGTTAATTGATTAATAAATAAAAATTACCAGCTAAAATGGATAAAAGCTTATAGATAGAGAACTTTTAAAAATTAATATTAGCTGGTAATTTTTTTATAAACCTTGAAAAATAAGGCTTTATAGGTTATAATGAAGAAAAAGAATATTGATTTTACTGCG # Right flank : TGAGTCCATTTATTGATATGATGTAATAGGCTGAATATGTTATTTGTTTTTTAGTGATGTTATTTTATTGATTAATATTAACAAGTGATGCTTAATTGCAAAGAGAATAAGAAAAGACATAACTTTAATATATTTTAAGGTTATGTCTTTTTTTATAAAAATTTTTCTTTTTTATGCCGAATTTTGTTTTTAGTGGTGGATATTATATATATAAAGAAAAAATGAGGTGAAAATCATGAAAGCATTATTTGAATTTGTATGGTTTCTTATTAAGGTTTGCTTAATGATATTTGCTGGTGTTGTTTTTGGTGGTATAGCTCATTTTATAATTGAAAGTGAGTTGATTTTTGTTATCCTTGGTTTGATACTGCTTTATTTCTTTGGCCCATATATTTTGGAGATTGTGTTAATGTATTCATTTGCTAAGGAGATAAAAAAGGAGCTTGATAAGTAAAATGGTAAAAAATACGAAAGGAGGTGAGTTAATGTAAATTTGTAAA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAGCATTAACATTGTACGGTCTCTTGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 11669-11311 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384012.1 Megamonas hypermegale DSM 1672 G550DRAFT_scaffold00028.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11668 30 100.0 36 .............................. ATTAATTCTGTAGCCGTAGAAGCCTTTTCAGCGTTT 11602 30 100.0 35 .............................. TAATAATTACCACCCATTATGCAGCTATACTATCA 11537 30 100.0 37 .............................. TAATCTCGCTGTTGGTTTGCGTCTGAAAAAGAAAAAA 11470 30 100.0 35 .............................. GCTGTTCCTGTAATAGGTAATGTAGGTGGTAGTTT 11405 30 100.0 35 .............................. CTGGATAAGATTTATAAGAATGAAGAACTATATGA 11340 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GATTAACCTTAACAAGAGTTGTATTTGAAT # Left flank : CAAACTTATTAAACAATAATTTTTCTGCTGATGAATTACAATGCTTATCCCGTGATATACAAACTGATTACATCATCATTTTTAACGGTGGTAAAATCAATTTTTATAATGCACAAGGCGAAGAAATTTCCGCTGATACAGATATGAATAAAATCGCTTTATACCATCAAACTAAAGATGTAAATATCGATATCACCCGCGAAATCGAAGTTCGCTTCACTGATTCTTATATCAATCGTATTATGACTAGCAATAATATATTTCAATCTTATATAGCTTGAAAACGATAAACTAAAAGAGCCTTTAAAGGCTCTTTTTTTATGCATTTTACCAGCCATAAAATAAACCTCTTATGCTAAAACCCTTTAGTTATAGGCGTTTATCGCTTTTTTTTAATAAATATGAAAAGATAACCAATCACTTGGTAAAAATAGATAAAAACATTGATAAATAAGGCTTTTTAGGATATACTAGAAAAAAGAAATCCAATATTTACATGG # Right flank : CAGGCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACAAGAGTTGTATTTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 33893-33466 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384011.1 Megamonas hypermegale DSM 1672 G550DRAFT_scaffold00008.8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 33892 30 80.0 37 ...T...T.T..TT...A............ TTCAACGTCAAAAGATTTTAACACAAATAGTTATAGA 33825 30 86.7 36 .......T.T...A...A............ CACATAATTGAACATAATTGTAAATGTTTACACTTA 33759 30 96.7 38 .......T...................... GTAATGCAGACTATTATAGACGCCCGCGCAATCGTAAA 33691 30 100.0 35 .............................. GTATTAAAAACACAACATACTTACACAATACCAAA 33626 30 100.0 35 .............................. AGCCGAGCGTGGGCAGGCGGAAACGGAAATTTGGG 33561 30 100.0 36 .............................. AAAGTTAGCATTTTGGATATTGGATAACTTAGATAC 33495 30 96.7 0 .......T...................... | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 94.3 36 ATTCAAAAACATCGTATGTTGCTATTAATC # Left flank : ACTAATATATTCATATAAAATAAATAAAAAATTCTTACAAAAAAACTACACATGAATTTTATAAACAAAATCTTTATCCTAATGTCAAAAAAACTATCACAATATAAATTATTTATATTTTTCTCTACTTGCAATTATACTTTTAATATAATCAGATGGTTCATAATCATCATCATTATTGTCATTGTTTTTTTCCTCTTTTACAGGTGGTAAGTCTCTACCACAGTATCTACAAACTATAGCTTCTTTTTTTATTATTTCTGCACAATAAGGACATTTCTTTAAACTATCATCTTGTTTTAATAAAGCATCATCATTTTTACTAATACAAAGAGCATGTACAAGAGCAACTATAAAAAGGAAAAAGCCGTAAATATACCATAAAACAAACGAACGACCTTTATTACTAGCAATCAAAGCAGGAATAAGACCTAAAATTAAACAAAAAAACAACATTTCTAGTATACCGTCCAACATATCACCTTCTTTTATCATTTATC # Right flank : AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCAAAAACATCGTATGTTGCTATTAATC # Alternate repeat : ATTCAAATACATCGTATGTTGCTATTAATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 36393-37079 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHW01000008.1 Megamonas hypermegale DSM 1672 G550DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 36393 30 100.0 36 .............................. TGGTTGCCCATAAATTTGGAAAAAGACATGACCATG 36459 30 100.0 34 .............................. TTGTATTTGGTTCTACATTTGTTTTTGGATCTAC 36523 30 100.0 36 .............................. ATGGAAATAACCCAAGATTTTCCCAAGTCATGCAAA 36589 30 100.0 36 .............................. ATTGATTAACAAAATAAGTGCTAATAAGTTTTTTAA 36655 30 100.0 36 .............................. AGATAATTTTAAAAAGTTTTTAACAGAACTAAATAC 36721 30 100.0 36 .............................. ATGTTGCATTTAACATCTCCCGTTTTTATTTGGCGG 36787 30 100.0 36 .............................. TAGCTACCCTGAAGATTATAAATCATCTCATTTACA 36853 30 90.0 36 ............ATT............... TTATATTCAGGAAAAATATGTGTTATATACAGTTTA 36919 30 90.0 34 ............ATT............... TTATCAAAAAAATCAAAAAACTGGGGGGTTAATT 36983 30 90.0 37 ............ATT............... ATAGAAAAGGATACCAGGTTTATTCGCAAATGGAAAC 37050 30 90.0 0 ............ATT............... | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.4 36 GTATTCGTACAAGAATTGTTATGGTTTATC # Left flank : TCTGCCAAAGAAAATAATTGAATTCATCTATACTTTAACACCGCTCATTGTAAAAGATGAAAGAGGATATTGGCGAAGTGTGATGAGTGAAGAAGAATTTGCAAGGCGCATACGCATAAATCTAGCCAATAAATGGAATTCGTTCAATAATGATAATATAGATGAAAATTTTCAATTATATACAACAATGGAGTTTTTGAATAAAGTTCCTATTTCGATAGAATATAAAAATGTAAAATTATTAGGTGATAAAATTCGTCTAAGCGTTGCGGATAATGAAATAGCGCAAAAGATGGCATATATGTCATTAGGCACAGGCTTAGGAGAAATGAACTCCCGCGGAGCAGGTTTTGTAAATTATCGCTGGTTATAAAAATAAATAATGAAAATAAAAAAGCAGCATGAATTTCATGCTGTTTTTTTATGCCTTTTTTAGTTATTTGCAAAAATTGTTAGGGTTTATCTTTTAGTGTTGAAGCGTTGTATCAACTTCAAATATA # Right flank : CCTTGTAAAATCAAGGTTTGTATATTTAGTATAGCTTAAATTTATTTATTTGACAAGGTTTTGCTGATTTTTACCAAGTGATGAAGATTTTTTCTGTTTTTATAAAAAAGCGTGATAAAAGCTTATAAATAAAGGGTTTTAAAATATTTACAATTTTTTGGGCTGGTAAATATAAAAGACTGAATGTAATCATTCAGCCTTTTGGGGATTTATTTATTAAGATATTTTTCTCTTAATGCTAATTTATGTTTCATAGCGGCGATAAAATCTTTCGCTCTTTGAATGTCATTTTCATCGGGGTGTTTTGCTGCACTTTCCCAGCGTTTTTTATTGCGTTCTGTAGCTGCATGAGGGTCATTTTTATCAGTATTATTTTGACGGCGAGCTAATAGCGCAGGATTTATCTTGCCTTGGCTGGAAAATGTTCCTAGTATAGTACAATCTTCGCCTAATTTATAAGCAGCACGGGCAAATGCTGTTACAGCGTGTTCACTGCCAGG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCGTACAAGAATTGTTATGGTTTATC # Alternate repeat : GTATTCGTACAAATTTTGTTATGGTTTATC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 15892-17502 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUHW01000011.1 Megamonas hypermegale DSM 1672 G550DRAFT_scaffold00009.9_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 15892 30 100.0 35 .............................. ACGCTTGCTTGCATATATGGGTATTCGATAGATTG 15957 30 100.0 38 .............................. ATAAAACTTCCAGTTATAAATAATTTACTGTTTTCTAT 16025 30 100.0 36 .............................. TTTACAATCGCTTGTGTGTCGATTACTGTTTGCATA 16091 30 100.0 35 .............................. GAAGCTCATCTCTAAACATATTTTTTGTAACTGCG 16156 30 100.0 36 .............................. GGAGCATACAAGTCTGCACCTGCCATTCGTGGCTGA 16222 30 100.0 37 .............................. TCGAGTATTGTTAGTTTTCCAAACTTTTTATTTATTA 16289 30 100.0 36 .............................. ATAAACTTCATCATGTTTCCTGTTGTTCCATTTGTA 16355 30 100.0 38 .............................. ATGAATGTAAATAATAATATTTATAGGCTATAGCTTCT 16423 30 100.0 36 .............................. GGAACTAAATGAACAAGAACGAAACACAATGCTACA 16489 30 100.0 36 .............................. GCTGTATCAAGTGGCTTTGAATTCGGCAAAACTTGC 16555 30 100.0 36 .............................. AGGAGTTAAGAAAAGACATCGGCTTAAGTCAAACAG 16621 30 100.0 36 .............................. TGAAATAACACCTCTCTTTAATTTTATACTGTTTAT 16687 30 100.0 36 .............................. TAAATATTAAATGCAATTTTGGCGGATTTTAAAACG 16753 30 100.0 36 .............................. GCTATTACATGGAGTAAAGAAAAATTCGTGGATGAC 16819 30 96.7 36 ................T............. ATGGTAGTATTTAGTTTTATCTAGCCAATAAAAATT 16885 30 96.7 39 ................T............. GACGGTGAAAAGTTTATTATTCCAATAACACCGCGCACC 16954 30 96.7 36 ................T............. AAAATATGAGCATTTAATAATGTATATATATAAAAT 17020 30 96.7 34 ................T............. ACAAGAGGGTGATTTTTTATAATAGTTTTATCGG 17084 30 96.7 36 ................T............. AGGAACACCATAAGAAATTGGGAACTTGGAATAAGA 17150 30 90.0 34 A.....T.........T............. ACAAGAGGGTGATTTTTTATAATAGTTTTATCGG 17214 30 96.7 36 ................T............. AGGAACACCATAAGAAATTGGGAACTTGGAATAAGA 17280 30 90.0 37 A.....T.........T............. TGTTAATATTTGATATGTTAATGACTGATGAAAATTA 17347 30 93.3 39 ......T...................A... CTCCAACGAACCTGATAAGTATTTTTACTGCCTAGTTGC 17416 29 90.0 28 ......T.....T...-............. AAAAAATAAACTGGTATTATTTATACCA Deletion [17473] 17473 30 76.7 0 .T....A.T...T...TA........A... | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 96.8 36 GATTAACAGTAACAAACGTTGTTTTTGAAT # Left flank : ATATTCATTGAAAGCGGGATATTGATAGATGCGCAAAAAAATAAATTATAATTATGCTTTTGTGTTTTACGATGTAAATGAGAAGAGAGTGCAAAAGGTATTTAAGATATGTAAAAAATATTTATCACATTTTCAAAACTCGGTATTTAGAGGAGAAATAACACCATCAAAATTAATGAAATTAAAATTGGAACTACAAAAAGTTATAGTAGATGAAGAAGATTTTGTTTGCATAATAAAGTTAATGAATGATGATGTATTTGGTGAAGAGTTTATAGGTAAAAAAGATGTAGAAACTGGAGAAAGTTTGTTTTTATAGACTAAATTTTACCAGGCATAAAAATAAGCATATGCCAATAAACCCTTATAAATAAAAGCGTTATGGCTCATTTCTTTCATTGGAAAGATAAATGCATTATGCCTGGTAAATTTTACTTAGAATGTTGAAATGTCAAGGTTTTTGAGCTATATTATAAAATATAAAGTCTTTAAAGACGAGG # Right flank : TGAAGTTTTATATTAATTTTTGCTTATATCTATCCATTCGATAGCTTTAGAATATTTTTCAAGCTCTGGAATAGTTAATTTTATGGCACTGTTTCGGCTACCACAGGCTGGATAAACGATATCAAATCGTTTTAGGGATATATCAAGATATACTTTTACGCCATCTTTTGGTGCAAATGGGCAAACGCCACCGATTGGAAAACCGGTATAGGTTTCTACCTCATCACCTTTTAACATCGTAGCTTTTTTGTGAAATTTTTCTTTAAATTTATGATTATCTATTCGTACATCACCAGCCATTACCACTAAAATTGCAGTATCGTTTAATTTGAATGACATTGTTTTAGCGATACGTGCTTCTTCGCAATTTAATGTTTGAGCAGCTTCAGAAACAGTTGCGCTAGAAGTTGGAAATTCCATGACTTTATCTTCCATATTAAATTGTTTAAAATATGCTTTTACCTTATCAATTGACAAAATAATCATTCCTTTATTGTGTT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACAGTAACAAACGTTGTTTTTGAAT # Alternate repeat : GATTAACAGTAACAAATGTTGTTTTTGAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //