Array 1 107440-105395 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVZ01000005.1 Salmonella enterica subsp. enterica serovar Amsterdam strain BCW_2891 NODE_5_length_209648_cov_3.1898, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107439 29 100.0 32 ............................. GAACCTTTATTAAGAAAGGGGAGTATTGTTAT 107378 29 100.0 32 ............................. GCAATTTTTAGGCGCTCAGTCCACTGCTTGAT 107317 29 100.0 32 ............................. TCAGACAGTAAACCCCACGGCCTGACCGGGAG 107256 29 100.0 33 ............................. GCAGGTTTATTTCCCGCGTGGGCAGGCGCTGGA 107194 29 100.0 32 ............................. TGGTGTTGAGGGATTGCCATCAACACGATATG 107133 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 107072 29 100.0 32 ............................. CTTTACAGTCCACGCCGCGAACTTCCTTTACC 107011 29 100.0 32 ............................. ACAACAACTATAGCGATAGTGGGTTCAAAGGG 106950 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 106889 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 106828 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 106767 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 106706 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 106645 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 106584 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 106523 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 106462 29 100.0 32 ............................. TTTTATAACGACACTAAAACCCGCCAGTTATA 106401 29 100.0 32 ............................. ATTTTAACGGCAAGGTCGACAGGAGATACCAC 106340 29 100.0 32 ............................. TTATTTCGCCCGCTGGTTCAGCAGGTGTGGCG 106279 29 100.0 32 ............................. AACTGGGGCGTCCAGGACAACTACCCGCGCGT 106218 29 100.0 32 ............................. GATTATGGTTCATTACGTGAAATTTTACTGGA 106157 29 100.0 32 ............................. AGAAATCCGATCCGAACGAACGTCGTGATATA 106096 29 100.0 32 ............................. CGAGAATACCAACGACAGCGTTCAGGTCGAGC 106035 29 100.0 32 ............................. GTGCCGTCTTTCCGGCTGTCAGGCTGGTTAGG 105974 29 100.0 32 ............................. GGCTGGTGGGTCACTATCGGCAAAATTGAACA 105913 29 100.0 32 ............................. ACGTTCAGGCACTCTTTCGCTATGCACCTGCG 105852 29 100.0 32 ............................. TTCTACTGTGTGCGCGAAAACAAAACCATGTC 105791 29 100.0 32 ............................. GTTGGGCGCATTGGCGTTTATGAGGATAGCCA 105730 29 100.0 33 ............................. GTTAACTGGACGGATAACCAGTATTTCACAGAC 105668 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 105607 29 100.0 32 ............................. CGAGATTGGCCAACGGCTCGATTACGACTTTA 105546 29 100.0 32 ............................. CCTCAGCGCCAGCGGGAGCCGTACGCTGGGTT 105485 29 93.1 32 ..C........A................. GAGCGAGTTCGCTACTACCGTGAGCAAAGCCT 105424 29 100.0 0 ............................. | A [105397] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAATAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125398-123724 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVZ01000005.1 Salmonella enterica subsp. enterica serovar Amsterdam strain BCW_2891 NODE_5_length_209648_cov_3.1898, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125397 29 100.0 32 ............................. GCCGTCAGCAATTACCCTTGCCGCCTCATCAA 125336 29 100.0 32 ............................. CGGCTTTCTATTCCAGTGCTGCGCAGGCGCTT 125275 29 100.0 32 ............................. GCTCTGCGGTTGATTGCGCCGAGCGTGGCGCG 125214 29 100.0 32 ............................. TTATCCCAATAAATTTCCGCATCCGTTACATC 125153 29 96.6 30 ............................T TTCATATATTGAGATAAATAGATGCGCGAG 125094 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 125033 29 100.0 33 ............................. CCGCCGTTCTCGTCTTTCTTGTCTTTATCCTTC 124971 29 100.0 32 ............................. TTACCGATGAGGTTTGCAGGAAATCCGGAAAC 124910 29 100.0 32 ............................. ATTGGGTGAACGGGAATGATCGCGAATGGCAC 124849 29 96.6 32 ............................A CTGACAATAAGGACAATGCCGGGGTCGCCTGC 124788 29 100.0 32 ............................. GCGGAAAAGTTATTAACGCTGACGCCGACGAA 124727 29 100.0 32 ............................. ATAACAGCAGCCACAATATAAACAATGGTTAA 124666 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCT 124605 29 100.0 32 ............................. TCTAATGATGGAACAGTATTACTTAAAAATTA 124544 29 100.0 32 ............................. GGGAGTGCGGATATTATCCGGAATTTGCTCAA 124483 29 100.0 32 ............................. TCTGGTCATCCGAGGCTGAGGCCGAGTGGCTG 124422 29 100.0 32 ............................. TTGAAAATCTGGCTAGAACACTAAGTCCAAAA 124361 29 100.0 32 ............................. AGTTACTCCGCCTTAAATACTCCCGCGTTTCT 124300 29 100.0 32 ............................. GAGGAATTGCCAAAAGTTGCACGGCACATCAA 124239 29 100.0 32 ............................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 124178 29 100.0 32 ............................. GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 124117 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 124056 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 123995 29 100.0 32 ............................. GCAACATCCTGCTCACCAGCTTTGACGGTCGT 123934 29 96.6 32 ..............C.............. CCAGTCCGCCCACCACTGCATCATCTCCCGTC 123873 29 100.0 32 ............................. TAATTACGTTTTTTCAACGTCTCGATAATCGC 123812 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 123751 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGCAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGTAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //